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openproblems-bio / task_ist_preprocessing Public

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update scripts #79

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update scripts

update scripts #79

Summary
Jobs
- List components to test
  
  Test (basic, count_aggregation, src/methods_count_aggregation/basic/config.vsh.yaml, src/methods_...
  
  Test (normalize_by_volume, src/methods_normalization/normalize_by_volume/config.vsh.yaml, src/met...
  
  Test (basic, src/methods_transcript_assignment/basic/config.vsh.yaml, src/methods_transcript_assi...
  
  Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...
  
  Test (alpha_shapes, src/methods_calculate_cell_volume/alpha_shapes/config.vsh.yaml, src/methods_c...
  
  Test (gene_efficiency_correction, src/methods_expression_correction/gene_efficiency_correction/co...
  
  Test (ssam, src/methods_cell_type_annotation/ssam/config.vsh.yaml, src/methods_cell_type_annotati...
  
  Test (custom, src/methods_segmentation/custom/config.vsh.yaml, src/methods_segmentation/custom/, ...
  
  Test (allen_brain_cell_atlas, datasets/loaders, src/datasets/loaders/allen_brain_cell_atlas/confi...
  
  Test (tenx_xenium, datasets/loaders, src/datasets/loaders/tenx_xenium/config.vsh.yaml, src/datase...
  
  Test (crop_region, datasets/processors, src/datasets/processors/crop_region/config.vsh.yaml, src/...
  
  Test (basic_qc_filter, src/methods_qc_filter/basic/config.vsh.yaml, src/methods_qc_filter/basic/,...
Run details
- Usage
- Workflow file

Usage Workflow file

Annotations

1 error

Process completed with exit code 1.

build / Test (alpha_shapes, src/methods_calculate_cell_volume/alpha_shapes/config.vsh.yaml, src/methods_c...

build / Test (alpha_shapes, src/methods_calculate_cell_volume/alpha_shapes/config.vsh.yaml, src/methods_c...

failed Sep 20, 2024 in 4m 27s

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