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openproblems-bio / task_ist_preprocessing Public

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Test

Fix test for ssam cell type annotation #83

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Fix test for ssam cell type annotation

Fix test for ssam cell type annotation #83

Summary
Jobs
- List components to test
  
  Test (basic, count_aggregation, src/methods_count_aggregation/basic/config.vsh.yaml, src/methods_...
  
  Test (normalize_by_volume, methods, src/methods_normalization/normalize_by_volume/config.vsh.yaml...
  
  Test (basic, methods, src/methods_transcript_assignment/basic/config.vsh.yaml, src/methods_transc...
  
  Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...
  
  Test (alpha_shapes, methods, src/methods_calculate_cell_volume/alpha_shapes/config.vsh.yaml, src/...
  
  Test (gene_efficiency_correction, src/methods_expression_correction/gene_efficiency_correction/co...
  
  Test (ssam, methods, src/methods_cell_type_annotation/ssam/config.vsh.yaml, src/methods_cell_type...
  
  Test (custom, methods, src/methods_segmentation/custom/config.vsh.yaml, src/methods_segmentation/...
  
  Test (allen_brain_cell_atlas, datasets/loaders, src/datasets/loaders/allen_brain_cell_atlas/confi...
  
  Test (tenx_xenium, datasets/loaders, src/datasets/loaders/tenx_xenium/config.vsh.yaml, src/datase...
  
  Test (crop_region, datasets/processors, src/datasets/processors/crop_region/config.vsh.yaml, src/...
  
  Test (similarity_metrics, metrics, src/metrics/similarity/config.vsh.yaml, src/metrics/similarity...
  
  Test (basic_qc_filter, src/methods_qc_filter/basic/config.vsh.yaml, src/methods_qc_filter/basic/,...
Run details
- Usage
- Workflow file

Usage Workflow file

build / Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...

succeeded Sep 22, 2024 in 3m 8s

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