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openproblems-bio / task_ist_preprocessing Public

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initial benchmark implementation #90

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initial benchmark implementation

initial benchmark implementation #90

Summary
Jobs
- List components to test
  
  Test (basic_count_aggregation, methods_count_aggregation, src/methods_count_aggregation/basic_cou...
  
  Test (normalize_by_volume, methods_normalization, src/methods_normalization/normalize_by_volume/c...
  
  Test (basic_transcript_assignment, methods_transcript_assignment, src/methods_transcript_assignme...
  
  Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...
  
  Test (alpha_shapes, methods_calculate_cell_volume, src/methods_calculate_cell_volume/alpha_shapes...
  
  Test (gene_efficiency_correction, methods_expression_correction, src/methods_expression_correctio...
  
  Test (ssam, methods_cell_type_annotation, src/methods_cell_type_annotation/ssam/config.vsh.yaml, ...
  
  Test (custom_segmentation, methods_segmentation, src/methods_segmentation/custom_segmentation/con...
  
  Test (allen_brain_cell_atlas, datasets/loaders, src/datasets/loaders/allen_brain_cell_atlas/confi...
  
  Test (tenx_xenium, datasets/loaders, src/datasets/loaders/tenx_xenium/config.vsh.yaml, src/datase...
  
  Test (crop_region, datasets/processors, src/datasets/processors/crop_region/config.vsh.yaml, src/...
  
  Test (similarity, metrics, src/metrics/similarity/config.vsh.yaml, src/metrics/similarity/, pytho...
  
  Test (basic_qc_filter, methods_qc_filter, src/methods_qc_filter/basic_qc_filter/config.vsh.yaml, ...
Run details
- Usage
- Workflow file

Usage Workflow file

build / Test (tenx_xenium, datasets/loaders, src/datasets/loaders/tenx_xenium/config.vsh.yaml, src/datase...

build / Test (tenx_xenium, datasets/loaders, src/datasets/loaders/tenx_xenium/config.vsh.yaml, src/datase...

succeeded Sep 23, 2024 in 1m 28s

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