add run_benchmark scripts

scripts/run_benchmark.sh

@@ -0,0 +1,23 @@
+#!/bin/bash
+
+RUN_ID="run_$(date +%Y-%m-%d_%H-%M-%S)"
+publish_dir="s3://openproblems-data/resources/task_template/results/${RUN_ID}"
+
+# make sure only log_cp10k is used
+cat > /tmp/params.yaml << HERE
+input_states: s3://openproblems-data/resources/task_template/datasets/**/state.yaml
+rename_keys: 'input_train:output_train;input_test:output_test'
+output_state: "state.yaml"
+publish_dir: "$publish_dir"
+HERE
+
+tw launch https://github.com/openproblems-bio/task_template.git \
+  --revision build/main \
+  --pull-latest \
+  --main-script target/nextflow/workflows/run_benchmark/main.nf \
+  --workspace 53907369739130 \
+  --compute-env 6TeIFgV5OY4pJCk8I0bfOh \
+  --params-file /tmp/params.yaml \
+  --entry-name auto \
+  --config common/nextflow_helpers/labels_tw.config \
+  --labels task_template,full

scripts/run_benchmark_test.sh

@@ -0,0 +1,19 @@
+#!/bin/bash
+
+cat > /tmp/params.yaml << 'HERE'
+input_states: s3://openproblems-data/resources_test/task_template/**/state.yaml
+rename_keys: 'input_train:output_train;input_test:output_test'
+output_state: "state.yaml"
+publish_dir: s3://openproblems-nextflow/temp/task_template/
+HERE
+
+tw launch https://github.com/openproblems-bio/task_template.git \
+  --revision build/main \
+  --pull-latest \
+  --main-script target/nextflow/workflows/run_benchmark/main.nf \
+  --workspace 53907369739130 \
+  --compute-env 6TeIFgV5OY4pJCk8I0bfOh \
+  --params-file /tmp/params.yaml \
+  --entry-name auto \
+  --config common/nextflow_helpers/labels_tw.config \
+  --labels task_template,test