feat: add purl as a CLI options

docs/source/_static/examples/oracle-quickstart/oci-micronaut/policies/oci-micronaut-purl.dl

@@ -0,0 +1,51 @@
+/* Copyright (c) 2023 - 2023, Oracle and/or its affiliates. All rights reserved. */
+/* Licensed under the Universal Permissive License v 1.0 as shown at https://oss.oracle.com/licenses/upl/. */
+
+
+#include "prelude.dl"
+
+/**
+ *  This is an example policy for OCI Micronaut project using PURL as the identifier.
+ *  See:
+ *      https://github.com/oracle-quickstart/oci-micronaut
+ *      https://github.com/package-url/purl-spec
+ */
+
+Policy("oci_micronaut_dependencies", parent, "") :-
+    check_passed(parent, "mcn_build_service_1"),
+    !violating_dependencies(parent, "mcn_build_service_1"), // There should not be any violating dependencies.
+    verify_provenance(dependency, "micronaut-projects/micronaut-core").
+
+// Projects that violate an expected check result.
+.decl violating_dependencies(parent: number, property: symbol)
+violating_dependencies(parent, property) :-
+    is_check(property),
+    transitive_dependency(parent, dependency), // note that since macaron by default does not traverse
+                                               // to transitive, dependencies, in most cases this is
+                                               // identical to `dependency(parent, repo)`.
+    !check_passed(dependency, property),
+    !exception_dependencies(dependency).
+
+// Exceptions for violating dependencies.
+.decl exception_dependencies(dependency: number)
+exception_dependencies(dependency) :-
+    is_repo(dependency, "github.com/mapstruct/mapstruct", _).
+
+exception_dependencies(dependency) :-
+    is_repo(dependency, "github.com/mysql/mysql-connector-j", _).
+
+exception_dependencies(dependency) :-
+    is_repo(dependency, "github.com/aws/aws-msk-iam-auth", _).
+
+exception_dependencies(dependency) :-
+    is_repo(dependency, "github.com/h2database/h2database", _).
+
+// Projects that we expect to generate a provenance.
+.decl verify_provenance(repo_num: number, repo_name: symbol)
+verify_provenance(repo_num, repo_name) :-
+    is_repo(repo_num, repo_name, _),
+    check_passed(repo_num, "mcn_provenance_level_three_1"),
+    check_passed(repo_num, "mcn_provenance_expectation_1").
+
+// Apply the policy.
+apply_policy_to("oci_micronaut_dependencies", component_id) :- is_component(component_id, "<target_software_component_purl>").

docs/source/conf.py

@@ -35,6 +35,7 @@
     "sphinx.ext.autosectionlabel",
     "sphinx_autodoc_typehints",
     "numpydoc",
+    "sphinx_tabs.tabs",
 ]
 autosectionlabel_prefix_document = True
 autosectionlabel_maxdepth = 2

docs/source/pages/cli_usage/action_analyze.rst

@@ -20,7 +20,7 @@ Usage
 .. code-block:: shell
 
     usage: ./run_macaron.sh analyze
-        [-h] [-sbom SBOM_PATH] [-rp REPO_PATH] [-b BRANCH]
+        [-h] [-sbom SBOM_PATH] [-purl PURL] [-rp REPO_PATH] [-b BRANCH]
         [-d DIGEST] [-pe PROVENANCE_EXPECTATION] [-c CONFIG_PATH]
         [--skip-deps] [-g TEMPLATE_PATH]
 
@@ -36,11 +36,16 @@ Options
 
     The path to the SBOM of the analysis target.
 
+.. option:: -purl PACKAGE_URL, --package-url PACKAGE_URL
+
+    The PURL string used to uniquely identify the target software component for analysis. Note: this PURL string can be
+    consequently used in the policies passed
+    to the policy engine for the same target.
+
 .. option:: -rp REPO_PATH, --repo-path REPO_PATH
 
     The path to the repository, can be local or remote
 
-
 .. option:: -b BRANCH, --branch BRANCH
 
     The branch of the repository that we want to checkout. If not set, Macaron will use the default branch

docs/source/pages/output_files.rst

@@ -41,17 +41,35 @@ The report files of Macaron (from using the :ref:`analyze action <analyze-action
 Unique result path
 ''''''''''''''''''
 
-For each target repository, Macaron creates a directory under ``reports`` to store the report files. This directory
-path is formed from the git host name (e.g ``github.com``), the owner and the name of that
-repository. The final path is created using the following template:
+For each target software component, Macaron creates a directory under ``reports`` to store the report files. This directory
+path is formed from the PURL string of that component. The final path is created using the following template:
 
 .. code-block::
 
-    <path_to_output>/reports/<git_service_name>/<owner>/<repo_name>
+    <path_to_output>/reports/<purl_type>/<purl_namespace>/<purl_name>
 
-.. note:: The git host name has all occurrence of ``.`` in the URL replaced by ``_``.
+For more information on the three fields ``type``, ``namespace`` and ``name`` of a PURL string, please see
+`PURL Specification <https://github.com/package-url/purl-spec/blob/master/PURL-SPECIFICATION.rst>`_.
 
-For example, the reports for `<https://github.com/micronaut-projects/micronaut-core>`_ repository will be stored under
+Typically, when a repository path is provided as the main software component of the :ref:`analyze action <analyze-action-cli>`,
+a PURL is generated from the repository path, which is then later used in generating the unique report path.
+
+For example, when running this command:
+
+.. code-block::
+
+  ./run_macaron.sh analyze -rp https://github.com/micronaut-projects/micronaut-core
+
+The report files will be stored into:
+
+.. code-block::
+
+  <path_to_ouput>/reports/github_com/micronaut-projects/micronaut-core
+
+.. note:: In the unique path, only ASCII letters, digits and ``-`` are allowed. Prohibited characters are changed into
+  ``_``. No changes to the letter case are made.
+
+For example, the reports for `<https://github.com/micronaut-projects/micronaut-core>`_ will be stored under
 ``<path_to_output>/reports/github_com/micronaut-projects/micronaut-core``.
 
 ''''''''''''

docs/source/pages/using.rst

@@ -90,6 +90,49 @@ To analyze a repository on a self-hosted GitLab instance, you need to do the fol
 
 - Obtain a GitLab access token having at least the ``read_repository`` permission and store it into the ``MCN_SELF_HOSTED_GITLAB_TOKEN`` environment variable. For more detailed instructions, see `GitLab documentation <https://docs.gitlab.com/ee/user/profile/personal_access_tokens.html#create-a-personal-access-token>`_.
 
+''''''''''''''''''''''''''''''''''''''''''''''''''''
+Providing a PURL string instead of a repository path
+''''''''''''''''''''''''''''''''''''''''''''''''''''
+
+Instead of providing the repository path to analyze a software component, you can use a `PURL <https://github.com/package-url/purl-spec/blob/master/PURL-SPECIFICATION.rst>`_. string for the target git repository.
+
+To simplify the examples, we use the same configurations as above if needed (e.g., for the self-hosted GitLab instances). The PURL string for a git repository should have the following format:
+
+.. code-block::
+
+  pkg:<git_service_domain>/<organization>/<name>
+
+The list bellow shows examples for the corresponding PURL strings for different git repositories:
+
+.. list-table:: Example of PURL strings for git repositories.
+   :widths: 50 50
+   :header-rows: 1
+
+   * - Repository path
+     - PURL string
+   * - ``https://github.com/micronaut-projects/micronaut-core``
+     - Both ``pkg:github/micronaut-projects/micronaut-core`` and ``pkg:github.com/micronaut-projects/micronaut-core`` are applicable as ``github`` is a pre-defined type as mentioned `here <https://github.com/package-url/purl-spec/blob/master/PURL-TYPES.rst>`_.
+   * - ``https://bitbucket.org/snakeyaml/snakeyaml``
+     - Both ``pkg:github/micronaut-projects/micronaut-core`` and ``pkg:github.com/micronaut-projects/micronaut-core`` are applicable as ``bitbucket`` is a pre-defined type as mentioned `here <https://github.com/package-url/purl-spec/blob/master/PURL-TYPES.rst>`_.
+   * - ``https://internal.gitlab.com/foo/bar``
+     - ``pkg:internal.gitlab.com/foo/bar``
+   * - ``https://gitlab.com/gitlab-org/gitlab``
+     - ``pkg:gitlab.com/gitlab-org/gitlab``
+
+Run the analysis using the PURL string as follows:
+
+.. code-block:: shell
+
+  ./run_macaron.sh analyze -purl <purl_string>
+
+You can also provide the PURL string together with the repository path. In this case, the PURL string will be used as the unique identifier for the analysis target:
+
+.. code-block:: shell
+
+  ./run_macaron.sh analyze -purl <purl_string> -rp <repo_path> -b <branch> -d <digest>
+
+.. note:: When providing the PURL and the repository path, both the branch name and commit digest must be provided as well.
+
 -------------------------------------------------
 Verifying provenance expectations in CUE language
 -------------------------------------------------
@@ -218,8 +261,11 @@ Running the policy engine
 Macaron's policy engine accepts policies specified in `Datalog <https://en.wikipedia.org/wiki/Datalog>`_. An example policy
 can verify if a project and all its dependencies pass certain checks. We use `Soufflé <https://souffle-lang.github.io/index.html>`_
 as the Datalog engine in Macaron. Once you run the checks on a target project as described :ref:`here <analyze-action>`,
-the check results will be stored in ``macaron.db`` in the output directory. We can pass the check results to the policy
-engine and provide a Datalog policy file to be enforced by the policy engine.
+the check results will be stored in ``macaron.db`` in the output directory. We pass the check results to the policy engine by providing the path to ``macaron.db`` together with a Datalog policy file to be validated by the policy engine.
+In the Datalog policy file, we must specify the identifier for the target software component that we are interested in to validate the policy against. These are two ways to specify the target software component in the Datalog policy file:
+
+#. Using the complete name of the target component (e.g. ``github.com/oracle-quickstart/oci-micronaut``)
+#. Using the PURL string of the target component (e.g. ``pkg:github.com/oracle-quickstart/oci-micronaut@<commit_sha>``).
 
 We use `Micronaut MuShop <https://github.com/oracle-quickstart/oci-micronaut>`_ project as a case study to show how to run the policy engine.
 Micronaut MuShop is a cloud-native microservices example for Oracle Cloud Infrastructure. When we run Macaron on the Micronaut MuShop GitHub
@@ -233,13 +279,36 @@ Now we can run the policy engine over these results and enforce a policy:
 
 .. code-block:: shell
 
-  ./run_macaron.sh verify-policy -o outputs -d outputs/macaron.db --file oci-micronaut.dl
+  ./run_macaron.sh verify-policy -o outputs -d outputs/macaron.db --file <policy_file>
+
+In this example, the Datalog policy files for both ways (as mentioned previously) are provided in `oci-micronaut-repo.dl <../_static/examples/oracle-quickstart/oci-micronaut/policies/oci-micronaut-repo.dl>`__ and `oci-micronaut-purl.dl <../_static/examples/oracle-quickstart/oci-micronaut/policies/oci-micronaut-purl.dl>`__.
+
+The differences between the two policy files can be observed below:
+
+.. tabs::
+
+  .. code-tab:: prolog Using repository complete name
+
+    apply_policy_to("oci_micronaut_dependencies", repo_id) :- is_repo(repo_id, "github.com/oracle-quickstart/oci-micronaut", _).
+
+  .. code-tab:: prolog Using PURL string
+
+    apply_policy_to("oci_micronaut_dependencies", component_id) :- is_component(component_id, "<target_software_component_purl>").
+
+The PURL string for the target software component is printed to the console by the :ref:`analyze command <analyze-action>`. For example:
+
+.. code::
+
+  > ./run_macaron.sh analyze -rp https://github.com/oracle-quickstart/oci-micronaut
+  > ...
+  > 2023-08-15 14:36:56,672 [INFO] The PURL string for the main target software component in this analysis is
+  'pkg:github.com/oracle-quickstart/oci-micronaut@3ebe0c9520a25feeae983eac6eb956de7da29ead'.
+  > 2023-08-15 14:36:56,672 [INFO] Analysis Completed!
 
-In this example, the Datalog policy file is provided in `oci-micronaut.dl <../_static/examples/oracle-quickstart/oci-micronaut/policies/oci-micronaut.dl>`__.
 This example policy can verify if the Micronaut MuShop project and all its dependencies pass the ``build_service`` check
 and the Micronaut provenance documents meets the expectation provided as a `CUE file <../_static/examples/micronaut-projects/micronaut-core/policies/micronaut-core.cue>`__.
 
-Thanks to Datalog’s expressive language model, it’s easy to add exception rules if certain dependencies do not meet a
+Thanks to Datalog's expressive language model, it's easy to add exception rules if certain dependencies do not meet a
 requirement. For example, `the Mysql Connector/J <https://slsa.dev/spec/v0.1/requirements#build-service>`_ dependency in
 the Micronaut MuShop project does not pass the ``build_service`` check, but can be manually investigated and exempted if trusted. Overall, policies expressed in Datalog can be
 enforced by Macaron as part of your CI/CD pipeline to detect regressions or unexpected behavior.

pyproject.toml

@@ -75,6 +75,7 @@ docs = [
     "sphinx-autodoc-typehints >=1.19.4,<2.0.0",
     "sphinx-rtd-theme >=1.0.0,<2.0.0",
     "numpydoc >=1.5.0,<2.0.0",
+    "sphinx_tabs >=3.4.1,<4.0.0",
 ]
 hooks = [
     "pre-commit >=3.0.0,<3.4.0",

scripts/dev_scripts/integration_tests.sh

@@ -90,6 +90,15 @@ python $COMPARE_DEPS $DEP_RESULT $DEP_EXPECTED || log_fail
 
 python $COMPARE_JSON_OUT $JSON_RESULT $JSON_EXPECTED || log_fail
 
+echo -e "\n----------------------------------------------------------------------------------"
+echo "apache/maven: Analyzing with PURL and repository path without dependency resolution."
+echo -e "----------------------------------------------------------------------------------\n"
+JSON_EXPECTED=$WORKSPACE/tests/e2e/expected_results/purl/maven/maven.json
+JSON_RESULT=$WORKSPACE/output/reports/maven/apache/maven/maven.json
+$RUN_MACARON analyze -purl pkg:maven/apache/maven -rp https://github.com/apache/maven -b master -d 6767f2500f1d005924ccff27f04350c253858a84 --skip-deps || log_fail
+
+python $COMPARE_JSON_OUT $JSON_RESULT $JSON_EXPECTED || log_fail
+
 echo -e "\n----------------------------------------------------------------------------------"
 echo "apache/maven: Analyzing the repo path, the branch name and the commit digest with dependency resolution using cyclonedx maven plugin (default)."
 echo -e "----------------------------------------------------------------------------------\n"
@@ -430,6 +439,28 @@ fi
 
 GITHUB_TOKEN="$temp"
 
+echo -e "\n----------------------------------------------------------------------------------"
+echo "apache/maven: test analyzing with invalid PURL"
+echo -e "----------------------------------------------------------------------------------\n"
+$RUN_MACARON analyze -purl invalid-purl -rp https://github.com/apache/maven --skip-deps
+
+if [ $? -eq 0 ];
+then
+    echo -e "Expect non-zero status code but got $?."
+    log_fail
+fi
+
+echo -e "\n----------------------------------------------------------------------------------"
+echo "apache/maven: test analyzing with both PURL and repository path but no branch and digest are provided."
+echo -e "----------------------------------------------------------------------------------\n"
+$RUN_MACARON analyze -purl pkg:maven/apache/maven -rp https://github.com/apache/maven --skip-deps
+
+if [ $? -eq 0 ];
+then
+    echo -e "Expect non-zero status code but got $?."
+    log_fail
+fi
+
 echo -e "\n----------------------------------------------------------------------------------"
 echo "Test using a custom template file that does not exist."
 echo -e "----------------------------------------------------------------------------------\n"

scripts/dev_scripts/integration_tests_docker.sh

@@ -85,6 +85,15 @@ $RUN_MACARON_SCRIPT analyze -rp https://github.com/apache/maven -b master -d 676
 
 $COMPARE_DEPS $DEP_RESULT $DEP_EXPECTED || log_fail
 
+echo -e "\n----------------------------------------------------------------------------------"
+echo "apache/maven: Analyzing with PURL and repository path without dependency resolution."
+echo -e "----------------------------------------------------------------------------------\n"
+JSON_EXPECTED=$WORKSPACE/tests/e2e/expected_results/purl/maven/maven.json
+JSON_RESULT=$WORKSPACE/output/reports/maven/apache/maven/maven.json
+$RUN_MACARON_SCRIPT analyze -purl pkg:maven/apache/maven -rp https://github.com/apache/maven -b master -d 6767f2500f1d005924ccff27f04350c253858a84 --skip-deps || log_fail
+
+$COMPARE_JSON_OUT $JSON_RESULT $JSON_EXPECTED || log_fail
+
 echo -e "\n----------------------------------------------------------------------------------"
 echo "urllib3/urllib3: Analyzing the repo path when automatic dependency resolution is skipped."
 echo "The CUE expectation file is provided as a single file path."
@@ -142,6 +151,28 @@ then
 fi
 GITHUB_TOKEN="$temp"
 
+echo -e "\n----------------------------------------------------------------------------------"
+echo "apache/maven: test analyzing with invalid PURL"
+echo -e "----------------------------------------------------------------------------------\n"
+$RUN_MACARON_SCRIPT analyze -purl invalid-purl -rp https://github.com/apache/maven --skip-deps
+
+if [ $? -eq 0 ];
+then
+    echo -e "Expect non-zero status code but got $?."
+    log_fail
+fi
+
+echo -e "\n----------------------------------------------------------------------------------"
+echo "apache/maven: test analyzing with both PURL and repository path but no branch and digest are provided."
+echo -e "----------------------------------------------------------------------------------\n"
+$RUN_MACARON_SCRIPT analyze -purl pkg:maven/apache/maven -rp https://github.com/apache/maven --skip-deps
+
+if [ $? -eq 0 ];
+then
+    echo -e "Expect non-zero status code but got $?."
+    log_fail
+fi
+
 if [ $RESULT_CODE -ne 0 ];
 then
     exit 1