Repositories list

• status.bioconductor.org

  Public
  Status page for Bioconductor based on cstate hugo site

  0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• gha-build-rstudio-release-amd64

  Public
  R

  •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• BiocSlack

  Public
  CSS

  •

  MIT License

  •0•1•0•0•Updated Feb 5, 2025Feb 5, 2025

• bioconductor-training

  Public
  Bioconductor teaching and education committee

  trainingeducationteaching+ 2bioconductorcommittee

  HTML

  •26•44•8•0•Updated Feb 4, 2025Feb 4, 2025

• HDF5Array

  Public
  HDF5 datasets as array-like objects in R

  bioconductor-packagecore-packageu24ca289073

  R

  •14•12•4•1•Updated Feb 4, 2025Feb 4, 2025

• biocViews

  Public
  Categorized views of R package repositories

  bioconductor-packagecore-package

  R

  •4•4•3•4•Updated Feb 4, 2025Feb 4, 2025

• GenomicDataCommons

  Public
  Provide R access to the NCI Genomic Data Commons portal.

  data-sciencebioinformaticsr+ 8genomicscancerapi-clientcore-servicestcgabioconductorvignette+ 1

  R

  •23•85•18•0•Updated Feb 3, 2025Feb 3, 2025

• BBS

  Public
  The Bioconductor Build System

  Shell

  •11•9•51•2•Updated Feb 3, 2025Feb 3, 2025

• BiocCheck

  Public
  core-servicesbioconductor-package

  R

  •27•8•23•0•Updated Feb 3, 2025Feb 3, 2025

• DelayedArray

  Public
  A unified framework for working transparently with on-disk and in-memory array-like datasets

  bioconductor-packagecore-packageu24ca289073

  R

  •9•26•18•0•Updated Feb 3, 2025Feb 3, 2025

• SparseArray

  Public
  High-performance sparse data representation and manipulation in R

  bioconductor-packagecore-package

  C

  •2•8•3•0•Updated Feb 3, 2025Feb 3, 2025

• bioconductor_docker

  Public
  Docker Containers for Bioconductor

  docker-imagebioconductorbioconductor-containers

  Shell

  •

  Artistic License 2.0

  •31•75•16•3•Updated Jan 31, 2025Jan 31, 2025

• bioconductor_salt

  Public
  Salt to configure Linux and Mac (x86_64, arm64) for the BBS

  vagrantsaltstackbioconductor

  SaltStack

  •3•1•27•2•Updated Jan 31, 2025Jan 31, 2025

• gbcc2025

  Public
  CSS

  •

  MIT License

  •2•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• bioconductor.org

  Public
  Source code for the Bioconductor website

  websitebioconductor

  HTML

  •40•25•13•11•Updated Jan 30, 2025Jan 30, 2025

• anvil-portal

  Public
  The front-facing AnVIL user portal

  Jupyter Notebook

  •

  MIT License

  •21•0•0•1•Updated Jan 30, 2025Jan 30, 2025

• support.bioconductor.org

  Public
  support site code base. Based on Biostars.

  Python

  •

  MIT License

  •3•2•22•0•Updated Jan 30, 2025Jan 30, 2025

• BiocManager

  Public
  CRAN Package For Managing Bioconductor Packages

  core-servicescranr-package

  R

  •25•74•20•3•Updated Jan 29, 2025Jan 29, 2025

• workshop-contributions

  Public
  Repository for managing contributions to workshop.bioconductor.org

  HTML

  •0•5•0•0•Updated Jan 29, 2025Jan 29, 2025

• pkgrevdocs

  Public
  Training Material for Community Reviewers

  TeX

  •

  Other

  •18•8•10•1•Updated Jan 28, 2025Jan 28, 2025

• Contributions

  Public
  Contribute Packages to Bioconductor

  bioconductor

  33•135•58•0•Updated Jan 28, 2025Jan 28, 2025

• BiocGenerics

  Public
  Defines many S4 generic functions used in Bioconductor

  bioconductor-packagecore-package

  R

  •8•12•0•0•Updated Jan 26, 2025Jan 26, 2025

• BiocHubsShiny

  Public
  R

  •0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

• AnVIL

  Public
  Interact with AnVIL and Leonardo projects

  R

  •10•8•11•0•Updated Jan 24, 2025Jan 24, 2025

• AnVILGCP

  Public
  Functionality for the AnVIL platform using GCP

  R

  •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• GenomeInfoDb

  Public
  Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

  bioconductor-packagecore-package

  R

  •13•32•7•0•Updated Jan 23, 2025Jan 23, 2025

• hubsingest

  Public
  Scripts to facilitate ingestion at temporary endpoints for data targeting the Bioconductor Hubs

  Shell

  •

  MIT License

  •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• BiocHubsIngestR

  Public
  Helper package for users to upload data to temporary BiocHubsIngest endpoints

  u24ca289073

  R

  •

  MIT License

  •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• EuroBioC2025

  Public
  Website of the European Bioconductor Conference 2025

  conferencebioconductoreuropean

  CSS

  •3•2•0•0•Updated Jan 23, 2025Jan 23, 2025

• BSgenome

  Public
  Software infrastructure for efficient representation of full genomes and their SNPs

  bioconductor-packagecore-package

  R

  •8•9•7•0•Updated Jan 21, 2025Jan 21, 2025