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    9 repositories

    • v0.16PhyloNetworks-wiki-tutorial

      Public
      This repository contains the wiki tutorial from the PhyloNetworks.jl repository prior to refactoring and is meant to be used with version 0.16 of PhyloNetworks. The tutorial includes a pipeline for estimating a network from sequence alignments.
      0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • PhyloGaussianBeliefProp.jl

      Public
      analysis of Gaussian models on phylogenetic networks using belief propagation (aka message passing)
      Julia
      •
      MIT License
      •0•6•0•0•Updated Jan 16, 2025Jan 16, 2025

    • SNaQ.jl

      Public
      Julia
      •
      MIT License
      •1•2•0•1•Updated Jan 15, 2025Jan 15, 2025

    • PhyloTraits.jl

      Public
      Julia package for the analysis of trait evolution along a phylogeny, including phylogenetic networks.
      Julia
      •
      MIT License
      •0•3•0•0•Updated Jan 13, 2025Jan 13, 2025

    • PhyloCoalSimulations.jl

      Public
      Julia
      •
      MIT License
      •2•14•1•0•Updated Dec 18, 2024Dec 18, 2024

    • PhyLiNC.jl

      Public
      Estimation of evolutionary networks from DNA sequences, assuming independent sites
      Julia
      •
      MIT License
      •0•3•0•1•Updated Dec 14, 2024Dec 14, 2024

    • QuartetNetworkGoodnessFit.jl

      Public
      julia package for phylogenetic networks analyses using 4-taxon subsets.
      Julia
      •
      Other
      •1•9•1•0•Updated Dec 14, 2024Dec 14, 2024

    • PhyloPlots.jl

      Public
      Display utilities for phylogenetic trees and networks
      Julia
      •
      Other
      •2•16•0•0•Updated Dec 10, 2024Dec 10, 2024

    • PhyloNetworks.jl

      Public
      PhyloNetworks: a julia package with utilities for phylogenetic networks
      Julia
      •
      Other
      •50•159•17•4•Updated Dec 10, 2024Dec 10, 2024