KrasnitzLab

All

11 repositories

RAIDS
Public
Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
rna-seq genomics inference ancestry cancer-genomics r-language r-package rna-sequencing whole-genome-sequencing exome-sequencing
R
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Other
•4•5•0•0•Updated Oct 22, 2024Oct 22, 2024
CNVMetrics
Public
R Package to compare copy number variant (CNV) results from multiple samples/methods
package r metrics r-language r-package cnv copy-number-variation
R
•2•4•4•0•Updated Jul 18, 2023Jul 18, 2023
OrganoidsToolBox
Public
Enabling organoid analyses using drug sreening, RNA-seq, exome-seq
R
•1•1•0•0•Updated Oct 25, 2022Oct 25, 2022
SCclust
Public
Segmentation and Clustering of Single Cell Sequencing Copy Number Profiles
r clustering segmentation single-cell-genomics
R
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MIT License
•1•0•0•0•Updated Aug 1, 2022Aug 1, 2022
CNprep
Public
CNprep Package - Pre-process DNA Copy Number (CN) Data for Detection of CN Events
bootstrap r r-package copy-number-variation copy-number dna-copy-number
R
•2•3•1•0•Updated May 19, 2022May 19, 2022
p53-LOH-figures
Public
R
•0•0•0•0•Updated May 14, 2022May 14, 2022
SCGV
Public
SCGV is an interactive graphical tool for single-cell genomics data, with emphasis on single-cell genomics of cancer
genomics single-cell genomics-visualization single-cell-genomics
Python
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MIT License
•2•8•0•0•Updated Mar 23, 2022Mar 23, 2022
conda-recipes
Public
Shell
•0•0•0•0•Updated Dec 2, 2021Dec 2, 2021
sgains
Public
Sparse Genomic Analysis of Individual Nuclei by Sequencing
Python
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MIT License
•1•1•0•0•Updated Sep 3, 2021Sep 3, 2021
sgains_docker
Public
Dockerfile
•0•0•0•0•Updated May 1, 2019May 1, 2019
NormaFlyze
Public
Shell
•0•0•0•0•Updated Nov 16, 2017Nov 16, 2017