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    59 repositories

    • SlicerCochlea

      Public
      Multi-modal cochlea Images registration, segmentation and analysis
      Python
      •4•13•2•0•Updated Jun 13, 2024Jun 13, 2024

    • SlicerCervicalSpine

      Public
      Python
      •5•8•5•0•Updated Apr 23, 2024Apr 23, 2024

    • ITKElastix

      Public
      An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images
      TypeScript
      •
      Apache License 2.0
      •22•0•0•0•Updated Dec 6, 2023Dec 6, 2023

    • TotalSegmentator

      Public
      Tool for robust segmentation of >100 important anatomical structures in CT images
      Python
      •
      Apache License 2.0
      •253•1•0•0•Updated Nov 21, 2023Nov 21, 2023

    • SlicerTotalSegmentator

      Public
      Fully automatic total body segmentation in 3D Slicer using "TotalSegmentator" AI model
      Python
      •
      Apache License 2.0
      •25•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • nnUNet

      Public
      Python
      •
      Apache License 2.0
      •1.8k•0•0•0•Updated Oct 27, 2023Oct 27, 2023

    • nnDetection

      Public
      nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
      Python
      •
      Apache License 2.0
      •97•0•0•0•Updated Sep 18, 2023Sep 18, 2023

    • YOLOv8-Medical-Imaging

      Public
      This project uses YOLOv8 to perform tasks like classification, detection, and segmentation in medical images through a user-friendly interface.
      Python
      •9•0•0•0•Updated Sep 7, 2023Sep 7, 2023

    • BezierInfo-2

      Public
      The development repo for the Primer on Bézier curves, https://pomax.github.io/bezierinfo
      HTML
      •
      Other
      •289•0•0•0•Updated Aug 15, 2023Aug 15, 2023

    • UniverSeg

      Public
      UniverSeg: Universal Medical Image Segmentation
      Python
      •
      Apache License 2.0
      •53•0•0•0•Updated Jul 15, 2023Jul 15, 2023

    • MedicalDataAugmentationTool-CellTracking

      Public
      Python
      •
      GNU General Public License v3.0
      •8•0•0•0•Updated Mar 24, 2023Mar 24, 2023

    • DeepReg

      Public
      Medical image registration using deep learning
      Python
      •
      Apache License 2.0
      •77•0•0•0•Updated Dec 15, 2022Dec 15, 2022

    • SlicerNotebooks

      Public
      Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •26•0•0•0•Updated Sep 20, 2022Sep 20, 2022

    • VisSimData

      Public
      models and sample datasets needed for Slicer VisSim extensions
      0•0•0•0•Updated Sep 20, 2022Sep 20, 2022

    • SlicerSegmentationRecipes

      Public
      Recipes for common medical image segmentation tasks using 3D Slicer
      HTML
      •
      MIT License
      •6•0•0•0•Updated Jul 26, 2022Jul 26, 2022

    • Unsupervised-Domain-Adaptation-Framework-for-Vestibular-Schwannoma-and-Cochlea-Segmentation

      Public
      An improved framework that performs domain adaptation on Vestibular Schwannomas and cochlea segmentation
      Jupyter Notebook
      •1•0•0•0•Updated Jul 11, 2022Jul 11, 2022

    • cochlea_segmentation_docker_monai

      Public
      Python
      •1•0•0•0•Updated May 17, 2022May 17, 2022

    • ADLReg

      Public
      Our(team: winter) solutions for MICCAI Learn2Reg 2021.
      Python
      •2•0•0•0•Updated May 8, 2022May 8, 2022

    • MedicalDataAugmentationTool-HeatmapUncertainty

      Public
      Python
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Apr 22, 2022Apr 22, 2022

    • abdominal_registration

      Public
      Deep learning based registration for Learn2Reg Challenge (Task 3 : CT Abdominal)
      Python
      •6•0•0•0•Updated Dec 6, 2021Dec 6, 2021

    • DeepLearning4All

      Public archive
      Jupyter Notebook
      •5•5•0•0•Updated Nov 5, 2021Nov 5, 2021

    • ElastixModelZoo

      Public
      Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastix
      Python
      •35•0•0•0•Updated Oct 11, 2021Oct 11, 2021

    • MedicalDataAugmentationTool

      Public
      Python
      •
      GNU General Public License v3.0
      •47•0•0•0•Updated Oct 4, 2021Oct 4, 2021

    • MutualInformationTutorial

      Public
      A simple tutorial of mutual information for images
      Jupyter Notebook
      •2•3•0•0•Updated Sep 2, 2021Sep 2, 2021

    • ImageRegistrationTutorial

      Public
      This project is to help students and researchers to learn the theory of medical image registration in a simple and practical way. I will try to explain the math using simple language and python code. The tutorials are python notebook based that you can run directly in Google colab. Your correction, feedback, and support are more than welcome!
      imageinformationmedicalregistrationstochasticgradientitkoptimisationmutualdescent
      Jupyter Notebook
      •
      MIT License
      •6•29•1•0•Updated Sep 1, 2021Sep 1, 2021

    • verse

      Public
      Everything about the 'Large Scale Vertebrae Segmentation Challenge' @ MICCAI 2019-2020
      Jupyter Notebook
      •
      MIT License
      •49•0•0•0•Updated Jul 23, 2021Jul 23, 2021

    • transforms3d

      Public
      3 dimensional spatial transformations
      Python
      •
      Other
      •83•0•0•0•Updated Jun 20, 2021Jun 20, 2021

    • Unpaired_MR_to_CT_Image_Synthesis

      Public
      Whole-body MR to CT image mapping
      Python
      •
      GNU Affero General Public License v3.0
      •10•0•0•0•Updated Apr 29, 2021Apr 29, 2021

    • FaceDetection

      Public
      Face Detection using ViolaJones on the CBCL Face Database
      Python
      •15•0•0•0•Updated Feb 7, 2021Feb 7, 2021

    • MedicalDataAugmentationTool-VerSe

      Public
      Python
      •
      GNU General Public License v3.0
      •81•0•0•0•Updated Dec 21, 2020Dec 21, 2020