Skip to content

@PennLINC Lifespan Informatics and Neuroimaging Center

Change the repository type filter

All

    Repositories list

    173 repositories

    • qsiprep

      Public
      Preprocessing of diffusion MRI
      pipelinesdistortion-correctionbidsmotion-correctiondiffusion-mridenoising-images
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •56•139•98•9•Updated Oct 9, 2024Oct 9, 2024

    • xcp_d

      Public
      Post-processing of fMRIPrep, NiBabies, and HCP outputs
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •24•75•38•8•Updated Oct 9, 2024Oct 9, 2024

    • CuBIDS

      Public
      Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
      neuroscienceneuroimagingneuroinformaticspython-packagedata-curationneuroscience-methodsneuroimaging-data-sciencedata-organization
      Python
      •
      MIT License
      •9•19•27•9•Updated Oct 9, 2024Oct 9, 2024

    • aslprep

      Public
      Preprocessing of arterial spin labeling (ASL) data
      aslcbfbids-apps
      Python
      •
      Other
      •15•37•36•7•Updated Oct 7, 2024Oct 7, 2024

    • qsirecon

      Public
      Reconstruction of preprocessed q-space images (dMRI)
      mribidsdwidiffusion-mribids-formatdmribidsappbids-apps
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•3•47•0•Updated Oct 7, 2024Oct 7, 2024

    • xcpd_build

      Public
      Builds a base docker image for xcp-d
      Dockerfile
      •2•2•4•0•Updated Oct 3, 2024Oct 3, 2024

    • qsirecon_build

      Public
      Docker build for QSIRecon
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • ingress2qsirecon

      Public
      A tool for ingressing outputs from other processing pipelines (e.g., HCP, UKB) for use in QSIRecon.
      dwimri-reconstruction
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • TheWay

      Public
      Boilerplate scripts for running workflows on Penn clusters
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •11•5•2•12•Updated Sep 26, 2024Sep 26, 2024

    • labSlides

      Public
      1•3•0•0•Updated Sep 24, 2024Sep 24, 2024

    • mebold-curation

      Public
      Code to prepare complex-valued multi-echo fMRI data acquired with the CMRR sequence for analysis.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • macedo_tracometry

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • msanxiety

      Public
      R
      •1•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • thalamocortical_development

      Public
      https://pennlinc.github.io/thalamocortical_development/
      R
      •1•0•0•0•Updated Sep 11, 2024Sep 11, 2024

    • qsiprep_build

      Public
      Builds the dependencies for qsiprep
      Dockerfile
      •
      Apache License 2.0
      •2•2•1•0•Updated Sep 6, 2024Sep 6, 2024

    • smripost-linc

      Public
      Aggregate interesting derivatives from sMRIPrep/Freesurfer derivatives
      BSD 3-Clause "New" or "Revised" License
      •0•0•5•0•Updated Sep 4, 2024Sep 4, 2024

    • AtlasPack

      Public
      Combined cortical/subcortical atlases for xcp-d and qsiprep
      HTML
      •2•8•4•1•Updated Aug 28, 2024Aug 28, 2024

    • qsibuild_dependencies

      Public
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 12, 2024Aug 12, 2024

    • open-neuroendocrine-data

      Public
      Open datasets with anatomical and functional MRI, as well as hormone measures.
      MIT License
      •0•0•10•0•Updated Jul 30, 2024Jul 30, 2024

    • network_replication

      Public
      HTML
      •
      MIT License
      •1•5•0•0•Updated Jul 27, 2024Jul 27, 2024

    • PennLINC.github.io

      Public
      Documentation for PennLINC
      HTML
      •
      MIT License
      •15•3•28•2•Updated Jul 20, 2024Jul 20, 2024

    • Vogel_PLS_Tx-Space

      Public
      Data and code for Vogel et al., Transcriptomic Gradients paper
      Jupyter Notebook
      •
      MIT License
      •2•6•0•0•Updated Jun 15, 2024Jun 15, 2024

    • paper-template

      Public template
      A template repository for scientific projects.
      Jupyter Notebook
      •
      MIT License
      •0•0•8•1•Updated Jun 12, 2024Jun 12, 2024

    • qsirecon-bad

      Public
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 4, 2024Jun 4, 2024

    • fw-heudiconv

      Public
      Heuristic-based Data Curation on Flywheel
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•6•6•1•Updated May 6, 2024May 6, 2024

    • aslprep_build

      Public
      Builds a base docker image for xcp-d
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•3•0•Updated May 3, 2024May 3, 2024

    • xcp_paper

      Public
      Shell
      •0•0•0•0•Updated Apr 26, 2024Apr 26, 2024

    • bids-specification

      Public
      Brain Imaging Data Structure (BIDS) Specification
      Python
      •
      Creative Commons Attribution 4.0 International
      •157•0•0•0•Updated Apr 24, 2024Apr 24, 2024

    • MRtrix3Tissue

      Public
      MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.
      C++
      •
      Mozilla Public License 2.0
      •180•0•0•0•Updated Apr 5, 2024Apr 5, 2024

    • executivefunction

      Public
      This repo includes documentation for the Executive Function project.
      HTML
      •
      MIT License
      •6•0•0•0•Updated Apr 1, 2024Apr 1, 2024