Repositories list

• Pharmacogenetic-Analysis-Pipeline

  Public
  A Snakemake powered pipeline developed to perform variant-effect-prediction and frequency analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.

  snakemakepipelinepharmacogenetics

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •1•0•13•5•Updated Dec 18, 2024Dec 18, 2024

• Population-Structure-Workflow

  Public
  A Snakemake powered pipeline developed to perform population structure and admixture analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.

  workflowsnakemakegenetics+ 2admixturepopulation-structure

  Python

  •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

• VCF-Validation-Workflow

  Public
  A Snakemake powered pipeline developed to perform quality control and data preparation given individual Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.

  Python

  •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• HIE_Genetic_data_analysis

  Public
  This repository contains scripts for the analysis of genetic variant data on genes associated with hypoxic ischemic encephalopathy (HIE). This work was completed in partial fulfillment of an MSc in Medical Immunology at the University of Pretoria by Megan A Holborn.

  Jupyter Notebook

  •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

• .github

  Public
  A *special* repository to manage our GitHub organisations README

  0•0•0•0•Updated Feb 23, 2022Feb 23, 2022