Repositories list

• annoq-site

  Public
  TypeScript

  •2•0•13•1•Updated Jan 31, 2025Jan 31, 2025

• Annoq_Overrepr_Workflow

  Public
  A workflow to query Annoq and run the overrepresentation

  TypeScript

  •1•0•1•0•Updated Jan 29, 2025Jan 29, 2025

• PM520

  Public
  PM520 Advanced Statistical Computing

  statistical-computingjax

  Jupyter Notebook

  •2•13•0•0•Updated Jan 28, 2025Jan 28, 2025

• MRIreduce

  Public
  R

  •

  The Unlicense

  •1•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• PM566-bots

  Public
  1•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• software-dev

  Public
  Coding Standards for the USC Biostats group

  rhpcreproducible-research+ 2standardsreproducibility

  HTML

  •7•36•2•0•Updated Jan 24, 2025Jan 24, 2025

• MethCon5

  Public
  Identify and rank CpG DNA methylation conservation along the human genome

  R

  •

  Other

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• .github

  Public
  Will contain details for our organization's landing page

  0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• annoq-api-v2

  Public
  Jupyter Notebook

  •1•0•3•0•Updated Jan 17, 2025Jan 17, 2025

• PM516

  Public
  0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

• geese-simulations

  Public
  R

  •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

• annoq-database

  Public
  Python

  •0•0•2•0•Updated Dec 12, 2024Dec 12, 2024

• PM566

  Public
  USC's Introduction to Health Data Science

  data-sciencemachine-learningcourse+ 5datavizcourse-materialsdatasciencerstatswebscraping

  HTML

  •27•14•15•0•Updated Dec 9, 2024Dec 9, 2024

• aphylo

  Public
  Statistical inference of genetic functions in phylogenetic trees

  rannotationsinference+ 3phylogeneticsr-packagercpparmadillo

  R

  •

  Other

  •2•6•8•1•Updated Dec 3, 2024Dec 3, 2024

• partition

  Public
  A fast and flexible framework for data reduction in R

  rdata-reductiondimensionality-reduction+ 1partitional-clustering

  HTML

  •

  Other

  •4•37•2•0•Updated Nov 10, 2024Nov 10, 2024

• SNPs-to-Genes_SnpEff-VEP-ANNOVAR

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

• GxEScanR

  Public
  R version of GxEScan

  R

  •2•7•3•1•Updated Oct 23, 2024Oct 23, 2024

• annoq-api

  Public
  Python

  •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• annoq-data-builder

  Public
  Shell

  •0•0•3•0•Updated Oct 18, 2024Oct 18, 2024

• BinaryDosage

  Public
  Converts VCF files to a binary format

  R

  •2•1•2•0•Updated Sep 26, 2024Sep 26, 2024

• PM566-whoami

  Public
  132•0•0•0•Updated Sep 16, 2024Sep 16, 2024

• rbootcamp

  Public
  R boot camp: Scientific Computing

  educationtutorialr+ 2simulationscientific-computing

  HTML

  •16•29•5•0•Updated Aug 22, 2024Aug 22, 2024

• xrnet

  Public
  R Package for Hierarchical Regularized Regression to Incorporate External Data

  R

  •3•10•1•0•Updated Aug 9, 2024Aug 9, 2024

• LAsBEST

  Public
  Repository of USC's LA's BEST program. https://lasbest.usc.edu/

  trainingeducationdatascience+ 4biostatisticsrstatsrprogrammingnih

  HTML

  •5•1•1•0•Updated Aug 1, 2024Aug 1, 2024

• cit

  Public
  C++

  •1•2•0•0•Updated Jun 27, 2024Jun 27, 2024

• slurmR

  Public
  slurmR: A Lightweight Wrapper for Slurm

  bioinformaticshpcrstats+ 2rpackageslurm

  R

  •

  Other

  •12•58•17•1•Updated Jun 17, 2024Jun 17, 2024

• AnnoQR

  Public
  R client wrap for AnnoQ API

  R

  •

  Other

  •2•1•4•0•Updated Jun 7, 2024Jun 7, 2024

• peregrine

  Public
  Python

  •1•0•0•0•Updated May 31, 2024May 31, 2024

• annoq-py

  Public
  Python package for annoq-api-v2

  Python

  •

  MIT License

  •1•0•0•0•Updated May 8, 2024May 8, 2024

• ACDC

  Public
  Association of covariance to detect differential co-expression

  R

  •

  Other

  •0•1•0•0•Updated Apr 9, 2024Apr 9, 2024