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    27 repositories

    • cni-qa-report-fmri

      Public
      Run QA metrics (displacement, signal spikes) to create a quality assurance report (png) for an fMRI NIfTI using CNI/NIMS code
      Python
      •1•2•0•1•Updated Jul 1, 2024Jul 1, 2024

    • cni-dcm-convert

      Public
      SciTran CNI DICOM Conversion Tool
      Python
      •2•2•1•1•Updated Jul 1, 2024Jul 1, 2024

    • pfile-mr-classifier

      Public
      Classification Gear for GE Pfiles
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•1•1•0•Updated Jun 29, 2024Jun 29, 2024

    • cni-dicom-mr-classifier

      Public
      Extract metadata from raw DICOM data from Siemens, Philips, or GE.
      Python
      •6•1•2•2•Updated Mar 14, 2024Mar 14, 2024

    • qa

      Public
      Read the QA Project outputs and graph
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Aug 26, 2023Aug 26, 2023

    • nims

      Public
      Legacy version of NIMS. All new development at @scitran
      JavaScript
      •12•14•0•1•Updated Dec 18, 2022Dec 18, 2022

    • flywheel-tsnr

      Public
      Python
      •0•0•0•0•Updated Sep 9, 2022Sep 9, 2022

    • mrs_voxel_placement

      Public
      MATLAB
      •0•0•0•0•Updated Jul 19, 2022Jul 19, 2022

    • t1fit

      Public
      T1 fitting algorithms
      Jupyter Notebook
      •
      MIT License
      •1•5•0•0•Updated Jul 11, 2022Jul 11, 2022

    • gephysio

      Public
      MATLAB
      •0•0•0•0•Updated Apr 12, 2022Apr 12, 2022

    • nimsdata

      Public
      Data Readers and Writers
      Python
      •
      MIT License
      •8•2•0•1•Updated May 11, 2021May 11, 2021

    • pfile-tools

      Public
      GE P-File Utilities
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•2•0•0•Updated Oct 30, 2020Oct 30, 2020

    • widgets

      Public
      Designs and firmware for various little devices in use at the Stanford CNI.
      C++
      •
      GNU General Public License v2.0
      •1•1•0•0•Updated Jun 25, 2020Jun 25, 2020

    • gannet

      Public
      Gannet analysis of edited MRS data
      Shell
      •3•0•0•0•Updated Nov 7, 2019Nov 7, 2019

    • rtfmri

      Public
      Real-time fMRI for a GE MRI system
      Python
      •4•15•0•0•Updated Aug 21, 2018Aug 21, 2018

    • MRS

      Public
      Python
      •
      MIT License
      •8•8•0•5•Updated Oct 21, 2017Oct 21, 2017

    • 3d_models

      Public
      Miscellaneous objects built for the CNI MR suite
      OpenSCAD
      •
      MIT License
      •0•0•0•0•Updated May 31, 2017May 31, 2017

    • pdr

      Public
      CNI Peripheral Data Reader (PDR)
      Python
      •1•2•0•0•Updated Feb 17, 2017Feb 17, 2017

    • nipy

      Public
      Neuroimaging in Python FMRI analysis package
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •145•0•0•0•Updated Jul 14, 2016Jul 14, 2016

    • psych204a

      Public
      Stanford human neuroimaging methods course materials
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •3•9•0•0•Updated Jan 7, 2016Jan 7, 2016

    • reaper

      Public
      Instrument Integration
      Python
      •
      MIT License
      •4•1•0•0•Updated Oct 17, 2015Oct 17, 2015

    • ipython-hydra

      Public
      Set of scripts to automatically launch iptyhon notebooks for each user who hits the page.
      Shell
      •10•68•1•0•Updated Sep 8, 2014Sep 8, 2014

    • slicedrop.github.com

      Public
      Slice:Drop is a web-based, interactive viewer for medical imaging data.
      JavaScript
      •
      Other
      •48•0•0•0•Updated Mar 12, 2014Mar 12, 2014

    • nimsrt

      Public
      NIMS real-time instrument interface
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 21, 2014Jan 21, 2014

    • Psych204A_OLD

      Public
      Human Neuroimaging Methods course materials
      Python
      •4•0•0•0•Updated Sep 20, 2013Sep 20, 2013

    • rickshaw

      Public
      JavaScript toolkit for creating interactive real-time graphs
      JavaScript
      •
      MIT License
      •941•0•0•0•Updated May 22, 2013May 22, 2013

    • StimPack

      Public
      CNI Stimulus Package
      Objective-C
      •0•1•0•0•Updated Jan 29, 2013Jan 29, 2013