i-Vis at Bilkent

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53 repositories

newt
Public
A web application to visualize and edit pathway models
editor bioinformatics biology layout systems-biology pathways network-visualization pathway-analysis web-based-visualization sbml
JavaScript
•
GNU Lesser General Public License v3.0
•27•53•37•0•Updated Oct 31, 2024Oct 31, 2024
sbgnviz.js
Public
A web based visualization tool for process description maps in SBGN
bioinformatics systems-biology pathways network-visualization sbgn
JavaScript
•
GNU Lesser General Public License v3.0
•13•35•3•0•Updated Oct 27, 2024Oct 27, 2024
chise.js
Public
A web application to visualize and edit the pathway models represented by SBGN Process Description Notation
editor bioinformatics biology systems-biology pathways network-visualization pathway-analysis sbgn
JavaScript
•
GNU Lesser General Public License v3.0
•6•15•7•0•Updated Oct 27, 2024Oct 27, 2024
cytoscape.js-hyse
Public
Hybrid Spring Embedder
TypeScript
•
MIT License
•0•1•4•0•Updated Sep 27, 2024Sep 27, 2024
sybvals
Public
SyBValS: Systems Biology Validation Service
bioinformatics systems-biology pathways
JavaScript
•
MIT License
•0•2•1•0•Updated Sep 17, 2024Sep 17, 2024
software-artifact-analyzer
Public
SAA: A tool to visually analyze varying software artifacts including source code files, pull requests, issues, and commits, as well as their links and their relationships with developers in a software project to improve the software development process
TypeScript
•0•0•14•0•Updated Sep 12, 2024Sep 12, 2024
cytoscape.js-complexity-management
Public
A Cytoscape.js extension to provide a unified complexity management framework for compound graphs
JavaScript
•
MIT License
•1•9•4•0•Updated Sep 3, 2024Sep 3, 2024
cytoscape.js
Public
Graph theory (a.k.a. network) library for analysis and visualisation (compatible with CommonJS/Node.js/Browserify/Webpack, AMD/Require.js, npm, Bower, jspm, Meteor/Atmosphere, jQuery, and plain JS/JavaScript)
JavaScript
•
MIT License
•1.6k•2•0•0•Updated Aug 31, 2024Aug 31, 2024
cytoscape.js-graph-algos
Public
HTML
•
MIT License
•1•4•1•0•Updated Aug 30, 2024Aug 30, 2024
cytoscape.js-node-editing
Public
A Cytoscape.js extension to provide grapples to resize nodes
editor network-visualization graph-drawing cytoscapejs cytoscapejs-extension diagramming
JavaScript
•
MIT License
•14•26•5•2•Updated Aug 28, 2024Aug 28, 2024
cytoscape.js-expand-collapse
Public
A Cytoscape.js extension to expand/collapse nodes for better management of complexity of compound graphs
network-visualization network-analysis graph-drawing cytoscapejs cytoscapejs-extension complexity-management
JavaScript
•
MIT License
•36•125•29•3•Updated Aug 28, 2024Aug 28, 2024
cytoscape.js-context-menus
Public
A Cytoscape.js extension to provide context menu around elements and core instance
editor network-visualization graph-drawing cytoscapejs cytoscapejs-extension diagramming
JavaScript
•
MIT License
•41•87•15•3•Updated Aug 28, 2024Aug 28, 2024
cytoscape.js-edge-editing
Public
A Cytoscape.js extension enabling interactive editing of edge anchor (bend or control) points
editor network-visualization graph-drawing cytoscapejs cytoscapejs-extension diagramming
JavaScript
•
MIT License
•24•42•6•0•Updated Aug 28, 2024Aug 28, 2024
cytoscape.js-clipboard
Public
A Cytoscape.js extension to provide copy-paste utilities
editor network-visualization graph-drawing cytoscapejs cytoscapejs-extension diagramming
JavaScript
•
MIT License
•4•8•1•0•Updated Aug 27, 2024Aug 27, 2024
cytoscape.js-fcose
Public
fCoSE: a fast Compound Spring Embedder
graphviz graph-algorithms graph-drawing
JavaScript
•
MIT License
•26•144•11•0•Updated Jul 23, 2024Jul 23, 2024
syblars
Public
SyBLaRS: Systems Biology Layout & Rendering Service
graphviz bioinformatics graph-algorithms systems-biology pathways network-visualization pathway-analysis graph-drawing
JavaScript
•
MIT License
•1•12•2•0•Updated Jul 11, 2024Jul 11, 2024
cytosnap
Public
A Node.js package that renders images of Cytoscape.js graphs on the server using Puppeteer
JavaScript
•
MIT License
•11•0•0•0•Updated Jun 11, 2024Jun 11, 2024
cytoscape.js-cise
Public
An implementation of the circular layout algorithm by Dogrusoz et al. as a Cytoscape.js extension
graphviz graph-algorithms graph-drawing
JavaScript
•
MIT License
•13•31•6•0•Updated Jun 6, 2024Jun 6, 2024
pathway-mapper
Public
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
graphviz bioinformatics systems-biology tcga cancer-genomics pathways network-visualization pathway-analysis cancer-pathways
TypeScript
•
GNU Affero General Public License v3.0
•28•55•6•1•Updated Mar 18, 2024Mar 18, 2024
cytoscape.js-visual-cues
Public
TypeScript
•
MIT License
•0•3•2•0•Updated Jan 23, 2024Jan 23, 2024
cmgm
Public
CMGM is a unified complexity management framework for compound graphs
JavaScript
•
MIT License
•0•2•1•0•Updated Oct 27, 2023Oct 27, 2023
visuall-advanced-query
Public
Java
•0•0•0•0•Updated Oct 23, 2023Oct 23, 2023
cytoscape.js-autopan-on-drag
Public
A Cytsocape.js extension to automatically pan when nodes are out of canvas bounds
editor network-visualization graph-drawing cytoscapejs cytoscapejs-extension diagramming
JavaScript
•
MIT License
•4•11•2•0•Updated Sep 29, 2023Sep 29, 2023
cytoscape.js-layvo
Public
JavaScript
•
MIT License
•0•2•2•0•Updated Jul 12, 2023Jul 12, 2023
cytoscape.js-grid-guide
Public
A Cytsocape.js extension to provide a framework for grid interactions such as grid lines and snapping to grid, and guidelines and snap support for alignment of nodes.
graphviz network-visualization graph-drawing cytoscapejs cytoscapejs-extension diagramming alignment-guidelines grid
JavaScript
•
MIT License
•9•59•10•2•Updated Mar 22, 2023Mar 22, 2023
cose-base
Public
Core module for compound spring embedder based layout styles
JavaScript
•
MIT License
•2•9•1•0•Updated Jan 17, 2023Jan 17, 2023
cytoscape.js-avsdf
Public
An implementation of the circular layout algorithm by He & Sykora
JavaScript
•
MIT License
•8•13•0•1•Updated Jun 21, 2022Jun 21, 2022
cytoscape-sbgn-stylesheet
Public
View biological networks via Cytoscape.js and sbgn-ml
JavaScript
•
MIT License
•31•0•0•0•Updated Jun 14, 2022Jun 14, 2022
layout-base
Public
Basic layout model and some utilities for some Cytoscape.js layout extensions
JavaScript
•
MIT License
•3•4•1•3•Updated May 28, 2022May 28, 2022
cytoscape.js-cose-bilkent
Public
The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.
HTML
•
MIT License
•45•0•0•0•Updated Feb 26, 2022Feb 26, 2022