Skip to content

@langmead-lab langmead-lab

Change the repository type filter

All

    Repositories list

    20 repositories

    • k2-extra

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • recount-unify

      Public
      next step after recount-pump in the monorail pipeline
      Shell
      •0•0•0•0•Updated Aug 9, 2024Aug 9, 2024

    • recount-pump

      Public
      HTML
      •0•5•4•0•Updated Aug 5, 2024Aug 5, 2024

    • monorail-external

      Public
      examples to run monorail externally
      Shell
      •
      MIT License
      •5•13•7•0•Updated Jul 18, 2024Jul 18, 2024

    • bbwt

      Public
      C
      •
      MIT License
      •0•2•0•0•Updated Jun 13, 2024Jun 13, 2024

    • reference_flow

      Public
      Reducing reference bias using multiple population reference genomes
      Python
      •
      MIT License
      •2•32•1•1•Updated May 27, 2024May 27, 2024

    • snapcount

      Public
      R Package for interfacing with Snaptron for rapid querying of expression counts
      R
      •
      MIT License
      •1•3•3•1•Updated Apr 26, 2022Apr 26, 2022

    • recount-clusters

      Public
      Cluster config files for recount-pump
      Shell
      •0•0•0•0•Updated Jun 9, 2021Jun 9, 2021

    • recount-projects

      Public
      Project files for recount projects
      Shell
      •0•1•1•0•Updated Jun 8, 2021Jun 8, 2021

    • vargas

      Public
      C++
      •
      MIT License
      •3•25•3•2•Updated May 23, 2021May 23, 2021

    • levioSAM-experiments

      Public
      Experiments for the levioSAM paper
      Python
      •0•0•0•0•Updated Mar 24, 2021Mar 24, 2021

    • reference_flow-experiments

      Public
      Experiments for reference flow
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 17, 2021Mar 17, 2021

    • ascot-ui

      Public
      HTML
      •0•1•0•0•Updated May 18, 2020May 18, 2020

    • bt2-ui

      Public
      R
      •2•3•2•1•Updated Jan 11, 2020Jan 11, 2020

    • FORGe

      Public
      Code for building and testing variant ranking strategies
      Python
      •
      MIT License
      •2•16•1•0•Updated May 27, 2019May 27, 2019

    • dashing-experiments

      Public
      Experiments for the Dashing manuscript
      C++
      •
      GNU General Public License v3.0
      •0•9•0•0•Updated Apr 22, 2019Apr 22, 2019

    • FORGe-experiments

      Public
      Paper describing variant ranking strategies and graph aligner results
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 6, 2018Dec 6, 2018

    • ginkgo

      Public
      Cloud-based single-cell copy-number variation analysis tool
      PHP
      •
      BSD 2-Clause "Simplified" License
      •28•0•0•0•Updated Sep 29, 2018Sep 29, 2018

    • runs

      Public
      Scripts for reproducing analyses of large RNA-seq datasets
      HTML
      •
      Other
      •9•0•0•0•Updated Mar 27, 2018Mar 27, 2018

    • hmmer-fork

      Public
      hmmer github fork as original code is hosted on svn
      C
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Aug 12, 2016Aug 12, 2016