Repositories list

• encode_scripts

  Public
  general purpose scripts for encode workflows

  R

  •1•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• hpc_scripts

  Public
  general purpose scripts for hpc workflows

  Shell

  •1•0•0•0•Updated Feb 6, 2025Feb 6, 2025

• sra_scripts

  Public
  general purpose scripts for sratools workflows

  Shell

  •1•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• ew-qctrimalign

  Public
  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• differentialabundance

  Public
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

  Nextflow

  •

  MIT License

  •42•0•0•0•Updated Oct 9, 2024Oct 9, 2024

• rnaseq

  Public
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  Nextflow

  •

  MIT License

  •722•0•0•0•Updated Oct 9, 2024Oct 9, 2024

• visualizations

  Public
  Collection of r-scripts for visalization

  R

  •0•0•0•0•Updated Aug 30, 2024Aug 30, 2024