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@lrgr Leiserson Research Group

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    22 repositories

    • lrgr.github.io

      Public
      Leiserson Research Group Website
      SCSS
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • superdendrix-explorer

      Public
      JavaScript
      •0•0•2•21•Updated Jan 6, 2023Jan 6, 2023

    • superdendrix-explorer-data

      Public
      Data processing and deployment for the SuperDendrix Explorer
      JavaScript
      •
      MIT License
      •1•0•0•1•Updated Jan 19, 2022Jan 19, 2022

    • scalpelsig

      Public
      R
      •1•4•0•0•Updated Sep 9, 2021Sep 9, 2021

    • EMF

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated May 6, 2020May 6, 2020

    • gi-data

      Public
      Python
      •
      MIT License
      •0•0•4•0•Updated May 2, 2020May 2, 2020

    • explosig-server

      Public
      Server-side component of ExploSig web app
      Python
      •
      MIT License
      •0•0•3•0•Updated Feb 26, 2020Feb 26, 2020

    • explosig-data

      Public
      Data processing for ICGC mutation data
      Python
      •
      MIT License
      •1•2•0•0•Updated Feb 20, 2020Feb 20, 2020

    • explosig-docker

      Public
      Repository to facilitate easy local deployment of ExploSig
      MIT License
      •0•0•0•0•Updated Feb 14, 2020Feb 14, 2020

    • explosig

      Public
      ExploSig: web-based interactive visualization of mutation signatures and somatic mutation data
      data-visualizationinteractive-visualizationsmutational-signatures
      Vue
      •
      MIT License
      •2•1•15•0•Updated Feb 6, 2020Feb 6, 2020

    • explosig-connect

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 27, 2020Jan 27, 2020

    • tcsm

      Public
      Tumor Covariate Signature Model
      Python
      •
      MIT License
      •4•1•1•0•Updated Oct 4, 2019Oct 4, 2019

    • Mix-MMM

      Public
      Python
      •0•0•0•0•Updated Sep 30, 2019Sep 30, 2019

    • sigma

      Public
      SigMa is a probabilistic model for the sequential dependencies of mutation signatures
      cancerhidden-markov-modelsbreast-cancermutational-signatures
      Python
      •
      MIT License
      •7•17•1•0•Updated Jul 27, 2019Jul 27, 2019

    • mutation-signatures-viz

      Public
      Mutation signature visualizations
      Python
      •
      MIT License
      •2•1•2•2•Updated Jun 6, 2019Jun 6, 2019

    • homologene

      Public
      A small pipeline to extract homologs from Homologene
      homologeneorthologs
      Python
      •1•0•1•0•Updated May 24, 2019May 24, 2019

    • signature-estimation-py

      Public
      Implementation of the SignatureEstimation quadratic programming algorithm in Python
      Python
      •
      MIT License
      •1•2•1•1•Updated Jan 30, 2019Jan 30, 2019

    • CENPA-SDL

      Public
      Uses DepMap datasets and tumor data to identify SDL partners of CENPA. In collaboration with the Basrai Group at NCI.
      Python
      •
      MIT License
      •1•1•0•0•Updated Jan 11, 2019Jan 11, 2019

    • HubAlign

      Public
      C++
      •
      MIT License
      •4•0•0•0•Updated Dec 21, 2018Dec 21, 2018

    • munk

      Public
      A MUlti-species Network Kernel algorithm to embed proteins from a target network into a source network, creating cross-species representations for various comparative and predictive tasks
      computational-biologynetwork-biology
      Python
      •
      MIT License
      •2•9•0•0•Updated Sep 10, 2018Sep 10, 2018

    • ardnmf

      Public
      A Python 3 implementation of automatic-relevance determination NMF (Tan & Fevotte 2013) based on their original implementation
      Python
      •6•4•0•0•Updated Aug 28, 2018Aug 28, 2018

    • multifactorial-immune-response

      Public
      Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features
      cancersupervised-learningimmunotherapy
      Python
      •
      MIT License
      •6•14•0•1•Updated Jun 29, 2018Jun 29, 2018