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    48 repositories

    • datadivr

      Public
      datadivr toolset
      Python
      •
      MIT License
      •1•0•8•0•Updated Jan 24, 2025Jan 24, 2025

    • AutoCore

      Public
      AutoCore code
      Jupyter Notebook
      •0•1•0•0•Updated Jan 22, 2025Jan 22, 2025

    • DataDiVR_WebApp

      Public
      JavaScript
      •
      MIT License
      •4•10•18•0•Updated Jan 21, 2025Jan 21, 2025

    • Radhouani_2025_QuantSeq

      Public
      QuantSeq analysis from Radhouani et al., 2025, Science Immunology.
      Jupyter Notebook
      •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

    • Radhouani_2025_scRNAseq

      Public
      scRNA-seq analysis for Radhouani et al, Science Immunology, 2025.
      Jupyter Notebook
      •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

    • SA_bone_marrow_scRNAseq

      Public
      scRNA-seq analysis for Radhouani et al, Science Immunology, 2025.
      Jupyter Notebook
      •0•0•0•0•Updated Jan 19, 2025Jan 19, 2025

    • SA_bone_marrow_QuantSeq

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 19, 2025Jan 19, 2025

    • Exposome

      Public template
      This repository will contain the analyses for the human exposure network paper
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Dec 30, 2024Dec 30, 2024

    • rgb4k

      Public
      this about color rgb rainbow max experience force lumination
      Python
      •0•0•0•0•Updated Nov 17, 2024Nov 17, 2024

    • Neuwirth_Malzl_et_al_2024

      Public
      Code repository for all analyses shown in Neuwirth and Malzl et al. 2024
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Nov 5, 2024Nov 5, 2024

    • sctools

      Public
      Collection of helper functions to make large scale single cell analysis more bearable
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • MultiOmeExplorer

      Public
      The shiny app for detailed data exploration complementing Buphamalai et.al.
      R
      •1•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • MultiOme

      Public
      Network-based project to explore gene connectivity through biological scales
      HTML
      •
      MIT License
      •5•23•1•0•Updated Oct 21, 2024Oct 21, 2024

    • mutsigintsKit

      Public
      Functions for the mutsigints project.
      R
      •0•0•0•0•Updated Sep 15, 2024Sep 15, 2024

    • mutsigints

      Public
      Interactions of mutational signatures and cancer states
      Jupyter Notebook
      •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

    • Grundtner_et_al_2024

      Public
      All the code used for data analysis with MEFISTO
      Jupyter Notebook
      •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

    • apobex

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 10, 2024Jun 10, 2024

    • CartoGRAPHs

      Public
      HTML
      •
      MIT License
      •3•22•1•0•Updated May 16, 2024May 16, 2024

    • catwork

      Public
      Enables participants of an event to scan each others QR codes and creates a social network in real time
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 30, 2024Apr 30, 2024

    • CytoDiVR

      Public
      Cytoscape Application to provide feature for the use of the DataDiVR
      Java
      •
      MIT License
      •0•0•0•0•Updated Apr 12, 2024Apr 12, 2024

    • ExampleExtension

      Public template
      Example Repository of an VRNetzer backend extension
      HTML
      •0•0•0•0•Updated Feb 29, 2024Feb 29, 2024

    • hfd-mutagenesis

      Public
      Code for Analysis and Figures of Manuscript "Mutational Landscape of Intestinal Stem Cells After Long-term in Vivo Exposure to High Fat Diet"
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jan 8, 2024Jan 8, 2024

    • network_course

      Public
      Jupyter Notebook
      •3•2•0•0•Updated Dec 6, 2023Dec 6, 2023

    • radipop_scripts

      Public
      Scripts to train and validate random forest model for HVPG prediction
      Jupyter Notebook
      •0•1•0•0•Updated Nov 20, 2023Nov 20, 2023

    • novarinocollab

      Public
      A repository containing the code for the collaboration with the Novarino lab
      Jupyter Notebook
      •0•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • cartoGRAPHs_app

      Public
      A webbased visualization framework for networks.
      Python
      •
      MIT License
      •3•4•0•0•Updated Oct 22, 2023Oct 22, 2023

    • VRNetzer

      Public
      A Virtual Reality platform for interactive, immersive network exploration.
      virtual-realitynetwork-analysisnetwork-visualization
      MIT License
      •3•34•11•0•Updated Sep 18, 2023Sep 18, 2023

    • PPI_Spread_for_MutSig

      Public
      Spread mutations capture disturbed repair modules in the PPI
      Python
      •0•0•0•0•Updated Jul 26, 2023Jul 26, 2023

    • ISMB_ECCB_2023_Network_VR_Visualization

      Public
      Jupyter Notebook
      •1•2•0•0•Updated Jul 23, 2023Jul 23, 2023

    • BioProfiling.jl

      Public
      A flexible Julia toolkit for high-dimensional cellular profiles
      morphological-analysishigh-content-screeningjulia
      Julia
      •
      MIT License
      •1•13•18•0•Updated Jul 14, 2023Jul 14, 2023