Repositories list

• opal

  Public
  OBiBa’s core database application for biobanks or epidemiological studies.

  Java

  •

  GNU General Public License v3.0

  •22•29•64•0•Updated Nov 3, 2024Nov 3, 2024

• docker-mica

  Public
  Shell

  •

  GNU General Public License v3.0

  •3•0•0•0•Updated Oct 30, 2024Oct 30, 2024

• mica2

  Public
  Mica is a web portal for epidemiological study consortia.

  Java

  •

  GNU General Public License v3.0

  •15•10•73•20•Updated Oct 30, 2024Oct 30, 2024

• docker-opal

  Public
  Shell

  •

  GNU General Public License v3.0

  •11•7•5•0•Updated Oct 29, 2024Oct 29, 2024

• obiba-home

  Public
  Obiba development environment

  HTML

  •2•0•0•1•Updated Oct 26, 2024Oct 26, 2024

• obiba-commons

  Public
  Reusable code for persistence (hibernate), security, spring and wicket.

  Java

  •9•5•0•0•Updated Oct 20, 2024Oct 20, 2024

• magma

  Public
  Data and meta-data abstraction layer.

  Java

  •

  GNU General Public License v3.0

  •14•6•11•0•Updated Oct 20, 2024Oct 20, 2024

• opal-doc

  Public
  Opal documentation

  Python

  •3•2•1•0•Updated Oct 13, 2024Oct 13, 2024

• agate-doc

  Public
  Agate documentation

  Python

  •0•0•0•0•Updated Oct 13, 2024Oct 13, 2024

• obiba.github.io

  Public
  Obiba Website

  HTML

  •2•0•0•0•Updated Oct 11, 2024Oct 11, 2024

• docker-agate

  Public
  Shell

  •

  GNU General Public License v3.0

  •3•0•1•0•Updated Oct 11, 2024Oct 11, 2024

• jennite-vcf-store

  Public
  VCF store

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

• agate

  Public
  OBiBa's user ID provider.

  Java

  •

  GNU General Public License v3.0

  •7•4•4•19•Updated Oct 11, 2024Oct 11, 2024

• plugins

  Public
  OBiBa plugins repository

  0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

• opal-analysis-validate

  Public
  Opal analysis plugin for data quality assurance based on the validate R package

  R

  •

  GNU General Public License v3.0

  •0•0•2•1•Updated Oct 11, 2024Oct 11, 2024

• opal-datasource-spss

  Public
  Java

  •

  GNU General Public License v3.0

  •0•0•1•0•Updated Oct 11, 2024Oct 11, 2024

• opal-datasource-redcap

  Public
  Java

  •

  GNU General Public License v3.0

  •0•0•2•0•Updated Oct 11, 2024Oct 11, 2024

• opal-datasource-readxl

  Public
  Opal datasource using R packages readxl and writexl

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

• opal-datasource-readr

  Public
  Opal datasource using R package readr

  Java

  •

  GNU General Public License v3.0

  •0•0•0•1•Updated Oct 11, 2024Oct 11, 2024

• opal-datasource-limesurvey

  Public
  Java

  •

  GNU General Public License v3.0

  •0•0•1•1•Updated Oct 11, 2024Oct 11, 2024

• opal-datasource-googlesheets4

  Public
  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

• datashield-deployment

  Public template
  Deployment of OBiBa for DataSHIELD

  Makefile

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

• opalr

  Public
  Opal R and Datashield utils

  R

  •3•3•3•0•Updated Sep 18, 2024Sep 18, 2024

• docker-rock

  Public
  Rock R server in a Docker container

  Shell

  •1•0•0•0•Updated Sep 18, 2024Sep 18, 2024

• docker-r

  Public
  Docker image with R inside and a lot of system libs

  Dockerfile

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

• rock

  Public
  R server with a REST API

  Java

  •

  GNU General Public License v3.0

  •1•3•2•1•Updated Sep 17, 2024Sep 17, 2024

• mica-search-es8

  Public
  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

• docker-amber

  Public
  Docker images for Amber server and apps

  Dockerfile

  •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

• amber-studio

  Public
  Content management app for Amber

  vuequasar

  Vue

  •

  MIT License

  •1•1•5•0•Updated Sep 13, 2024Sep 13, 2024

• amber-collect

  Public
  Data collection app for Amber

  vuequasar

  Vue

  •

  MIT License

  •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024