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    • Archive data and store metadata. Also generate the microscopy ID
      HTML
      MIT License
      0000Updated Jul 1, 2021Jul 1, 2021
    • PyCHM

      Public
      Cascaded Hierarchical Model Automatic Segmentation Algorithm in Python
      Python
      0010Updated May 30, 2018May 30, 2018
    • CHM

      Public
      Cascaded Hierarchical Model Automatic Segmentation Algorithm
      Shell
      BSD 2-Clause "Simplified" License
      0040Updated May 30, 2018May 30, 2018
    • segtools

      Public
      Contains scripts to assist with the segmentation of EM data
      Python
      1010Updated May 23, 2018May 23, 2018
    • geoEM

      Public
      Geometry analysis tools for segmented EM data
      C
      0000Updated Apr 25, 2018Apr 25, 2018
    • This repository contains all CIL public annotation metadata in the JSON format.
      2001Updated Apr 17, 2018Apr 17, 2018
    • MRC File Workflow validates a MRC file
      Shell
      0000Updated Dec 29, 2017Dec 29, 2017
    • CHM Image dataset Workflow
      Shell
      0000Updated Dec 29, 2017Dec 29, 2017
    • Generates tiled images from Single Slice CHM image dataset workflow output
      Shell
      0000Updated Dec 29, 2017Dec 29, 2017
    • Kepler workflow that verifies data passed to it is in valid structure for CHM Train Workflow
      Shell
      0000Updated Dec 29, 2017Dec 29, 2017
    • Files and scripts for the N15 pancreatic islet segmentation collaboration with Rafael.
      Python
      0000Updated Apr 27, 2016Apr 27, 2016
    • Scripts for data import, morphological quantification, and movie generation using Amira
      Python
      0010Updated Apr 26, 2016Apr 26, 2016
    • Automatically exported from code.google.com/p/slashportal
      HTML
      0070Updated Mar 17, 2016Mar 17, 2016
    • livewire

      Public
      Implementation of the livewire algorithm that has speed and quality of results.
      C++
      GNU General Public License v2.0
      67130Updated Dec 17, 2015Dec 17, 2015
    • Workflow to import data from NCMIR storage
      Shell
      0000Updated Dec 8, 2015Dec 8, 2015
    • Scripts for the 3D post-processing of segmented image stacks
      MATLAB
      1200Updated Oct 28, 2015Oct 28, 2015
    • Performs automated point counting stereology on greyscale probability maps
      C++
      0000Updated Sep 28, 2015Sep 28, 2015
    • hubzero

      Public
      hubzero cms, including component for crbs workflow service
      HTML
      0000Updated Sep 11, 2015Sep 11, 2015
    • HNS

      Public
      Hierarchical Neuronal Segmentation
      C++
      0000Updated Aug 18, 2015Aug 18, 2015
    • This workflow takes a shared link from Dropbox and imports it into SLASH
      Shell
      0000Updated Aug 7, 2015Aug 7, 2015
    • cookiecutter template for a Kepler Workflow that runs a Python script via the Python Actor. Compatible with CRBS Workflow Service
      Shell
      0000Updated Aug 3, 2015Aug 3, 2015
    • imodfile

      Public
      Verifies input WorkspaceFile is a valid IMOD model file
      Shell
      0000Updated Jul 31, 2015Jul 31, 2015
    • Template for Kepler Workflow that generates a script and executes it. Compatible with CRBS Workflow Service
      Shell
      0000Updated Jul 29, 2015Jul 29, 2015
    • Extracts single slice from CHM image dataset workflow output
      Shell
      0000Updated Jul 23, 2015Jul 23, 2015
    • Shell
      0000Updated Jul 16, 2015Jul 16, 2015
    • Workflow to create CHM image dataset from MRC file using IMOD
      Shell
      0000Updated Jul 14, 2015Jul 14, 2015
    • CHM Train Workflow
      Shell
      0000Updated May 28, 2015May 28, 2015
    • Contains example Kepler Workflows compatible with CRBS Workflow Service
      Shell
      0000Updated Mar 20, 2015Mar 20, 2015
    • cytoseg

      Public
      Automatically exported from code.google.com/p/cytoseg
      Python
      1020Updated Mar 16, 2015Mar 16, 2015
    • DP2

      Public
      Distributed Segmentation (using mturk)
      Python
      0000Updated Dec 12, 2013Dec 12, 2013