Repositories list

• drn-analysis

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• starfinder

  Public
  Customized snakemake workflow for computational image processing

  Jupyter Notebook

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  MIT License

  •0•1•1•0•Updated Jan 22, 2025Jan 22, 2025

• harmonics

  Public
  Harmonic analysis of spatial transcriptomics data

  Python

  •

  MIT License

  •0•1•0•0•Updated Jan 19, 2025Jan 19, 2025

• FuseMap

  Public
  FuseMap: Integrate spatial transcripomics with universal gene, cell, and tissue embeddings.

  deep-learningvariational-autoencodercontextualized-representation+ 5graph-neural-networksspatial-transcriptomicsmultimodal-representationfoundation-modelsspatial-brain-atlas

  Jupyter Notebook

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  Apache License 2.0

  •1•2•1•0•Updated Dec 2, 2024Dec 2, 2024

• probe-design

  Public
  Jupyter Notebook

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  MIT License

  •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• CAST

  Public
  CAST package

  Python

  •

  MIT License

  •3•29•0•0•Updated Oct 26, 2024Oct 26, 2024

• hepatic_recon

  Public
  Jupyter Notebook

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  MIT License

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• spin

  Public
  SPatial INtegration of spatially resolved transcriptomics datasets

  Jupyter Notebook

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  GNU General Public License v3.0

  •0•13•2•0•Updated Sep 12, 2024Sep 12, 2024

• starmap-matlab

  Public
  MATLAB

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  MIT License

  •1•1•0•0•Updated Aug 27, 2024Aug 27, 2024

• ClusterMap

  Public
  ClusterMap for multi-scale clustering analysis of spatial gene expression

  bioinformaticstranscriptomicscell-segmentation+ 4single-cell-analysisspatial-transcriptomicsin-situ-sequencingspatial-omics

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •11•43•5•0•Updated Jul 20, 2024Jul 20, 2024

• Multicap-analysis

  Public
  Jupyter Notebook

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  MIT License

  •0•2•0•0•Updated Jun 24, 2024Jun 24, 2024

• .github

  Public
  Organization profile

  0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

• mCNS-atlas

  Public
  Jupyter Notebook

  •4•17•3•0•Updated Mar 31, 2024Mar 31, 2024

• RIBOmap-analysis

  Public
  Jupyter Notebook

  •1•4•0•0•Updated Nov 14, 2023Nov 14, 2023

• mAD-analysis

  Public
  Jupyter Notebook

  •

  MIT License

  •3•4•1•0•Updated Nov 13, 2023Nov 13, 2023

• starmap-py

  Public
  Python

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  MIT License

  •0•1•0•0•Updated Aug 17, 2023Aug 17, 2023

• TEMPOmap

  Public
  This repository contains scripts for TEMPOmap.

  Jupyter Notebook

  •3•6•0•0•Updated Apr 12, 2023Apr 12, 2023

• rna-therapeutic

  Public
  Jupyter Notebook

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  MIT License

  •0•0•0•0•Updated Nov 12, 2021Nov 12, 2021