ci(msan): fine tune test timeouts #5909
Workflow file for this run
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| ####################################### | |
| # Ideally this would be done in seperate workflows but placing them all | |
| # in one is currently necessary to enforce job dependencies | |
| ####################################### | |
| ####################################### | |
| # Note the use of multiple checkout actions in most jobs. This has been | |
| # implemented to allow the use of CI scripts at a different ref or sha than | |
| # the source code they're evaluating. For push events (when a pull_request is | |
| # merged) there is no difference. However, for pull_request events this allows | |
| # us test code at the head of a pull_request using the CI scripts from the | |
| # prospectively merged pull_request, which will include any CI updates that | |
| # may have made it to the target branch after the pull_request was started. | |
| ####################################### | |
| ####################################### | |
| # Note regarding restore/save of cache for use by ccache: | |
| # | |
| # We only save cache on main branch runs. PR workflows only consume the | |
| # cache to avoid exceeding the 10 GB limit, which can cause cache thrashing. | |
| # Also, we only save the cache if there was *not* an exact match when cache | |
| # was restored. This avoids attempting to write to an existing cache key, | |
| # which results in failure to save the cache. While failure to save doesn't | |
| # cause job failures, it seems a waste and is easily avoidable. | |
| ####################################### | |
| name: GitHub Actions | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - release* | |
| pull_request: | |
| branches: | |
| - master | |
| - release* | |
| concurrency: | |
| group: ${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| ####################################### | |
| # Git checks | |
| ####################################### | |
| git_checks: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| num_code_changes: ${{ steps.get_code_changes.outputs.num_code_changes }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Check for appropriately named topic branch | |
| run: | | |
| scripts/ci/gh-actions/check-branch-name.sh | |
| - name: Check for code changes | |
| id: get_code_changes | |
| run: | | |
| scripts/ci/gh-actions/get-changed-files.sh | |
| echo "::group::Test script output files" | |
| ls -la *-changed-files.txt | |
| NUM_CHANGES=$(wc -l < filtered-changed-files.txt) | |
| echo "Number of files changed (filtered): ${NUM_CHANGES}" | |
| echo "num_code_changes=${NUM_CHANGES}" >> $GITHUB_OUTPUT | |
| ####################################### | |
| # Formatting jobs | |
| ####################################### | |
| format: | |
| needs: git_checks | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/ornladios/adios2:ci-formatting | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: gha | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: source | |
| - name: CXX | |
| working-directory: source | |
| run: ../gha/scripts/ci/scripts/run-clang-format.sh | |
| - name: Python flake8 | |
| working-directory: source | |
| run: ../gha/scripts/ci/scripts/run-flake8.sh | |
| - name: Python pylint | |
| working-directory: source | |
| run: ../gha/scripts/ci/scripts/run-pylint.sh | |
| - name: Python black | |
| working-directory: source | |
| run: ../gha/scripts/ci/scripts/run-black.sh | |
| - name: Shell | |
| working-directory: source | |
| run: ../gha/scripts/ci/scripts/run-shellcheck.sh | |
| ####################################### | |
| # Build and test jobs | |
| ####################################### | |
| ubuntu: | |
| needs: [format, git_checks] | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ubuntu-20.04 | |
| container: | |
| image: ghcr.io/ornladios/adios2:ci-spack-${{ matrix.os }}-${{ matrix.compiler }} | |
| options: --shm-size=1g | |
| env: | |
| GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.shared == 'static' && '-static' || ''}}-${{ matrix.parallel }} | |
| GH_YML_BASE_OS: Linux | |
| GH_YML_MATRIX_OS: ${{ matrix.os }} | |
| GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} | |
| GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} | |
| CCACHE_BASEDIR: "${GITHUB_WORKSPACE}" | |
| CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache" | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 6 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu20.04] | |
| compiler: [gcc8, gcc9, gcc10, clang6, clang10] | |
| parallel: [mpich] | |
| include: | |
| - os: ubuntu20.04 | |
| compiler: gcc8 | |
| parallel: ompi | |
| - os: ubuntu20.04 | |
| compiler: gcc8 | |
| parallel: serial | |
| - os: ubuntu20.04 | |
| compiler: clang6 | |
| parallel: ompi | |
| - os: ubuntu20.04 | |
| compiler: clang6 | |
| parallel: serial | |
| - os: ubuntu20.04 | |
| compiler: gcc8 | |
| parallel: serial | |
| shared: static | |
| - os: ubuntu20.04 | |
| compiler: gcc8 | |
| shared: static | |
| parallel: mpich | |
| constrains: build_only | |
| - os: ubuntu20.04 | |
| compiler: clang6 | |
| shared: static | |
| parallel: mpich | |
| constrains: build_only | |
| - os: ubuntu22.04 | |
| compiler: rocm | |
| parallel: serial | |
| constrains: build_only | |
| - os: ubuntu22.04 | |
| compiler: gcc11 | |
| parallel: mpich | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: gha | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: source | |
| - name: Restore cache | |
| uses: actions/cache/restore@v4 | |
| id: restore-cache | |
| with: | |
| path: .ccache | |
| key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
| restore-keys: | | |
| ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
| - name: Configure cache | |
| run: ccache -z | |
| - name: Setup | |
| run: gha/scripts/ci/gh-actions/linux-setup.sh | |
| - name: Update | |
| run: gha/scripts/ci/gh-actions/run.sh update | |
| - name: Configure | |
| run: gha/scripts/ci/gh-actions/run.sh configure | |
| - name: Build | |
| run: gha/scripts/ci/gh-actions/run.sh build | |
| - name: Print ccache statistics | |
| run: ccache -s | tee $GITHUB_STEP_SUMMARY | |
| - name: Save cache | |
| uses: actions/cache/save@v4 | |
| if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }} | |
| id: save-cache | |
| with: | |
| path: .ccache | |
| key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
| - name: Test | |
| if: ${{ matrix.constrains != 'build_only' }} | |
| run: gha/scripts/ci/gh-actions/run.sh test | |
| el8: | |
| needs: [format, git_checks] | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/ornladios/adios2:ci-el8-${{ matrix.compiler }} | |
| options: --shm-size=1g | |
| env: | |
| GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
| GH_YML_BASE_OS: Linux | |
| GH_YML_MATRIX_OS: ${{ matrix.os }} | |
| GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} | |
| GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} | |
| CCACHE_BASEDIR: "${GITHUB_WORKSPACE}" | |
| CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache" | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 6 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [el8] | |
| compiler: [icc, oneapi] | |
| parallel: [mpich] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: gha | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: source | |
| - name: Restore cache | |
| uses: actions/cache/restore@v4 | |
| id: restore-cache | |
| with: | |
| path: .ccache | |
| key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
| restore-keys: | | |
| ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
| - name: Configure cache | |
| run: ccache -z | |
| - name: Setup | |
| run: gha/scripts/ci/gh-actions/linux-setup.sh | |
| - name: Update | |
| run: gha/scripts/ci/gh-actions/run.sh update | |
| - name: Configure | |
| run: gha/scripts/ci/gh-actions/run.sh configure | |
| - name: Build | |
| run: gha/scripts/ci/gh-actions/run.sh build | |
| - name: Print ccache statistics | |
| run: ccache -s | |
| - name: Save cache | |
| uses: actions/cache/save@v4 | |
| if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }} | |
| id: save-cache | |
| with: | |
| path: .ccache | |
| key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
| - name: Test | |
| run: gha/scripts/ci/gh-actions/run.sh test | |
| macos: | |
| needs: [format, git_checks] | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ${{ matrix.image }} | |
| env: | |
| # Only way to source a file in a non interactive/non login shell. | |
| BASH_ENV: "/Users/runner/.bash_profile" | |
| CCACHE_BASEDIR: "${GITHUB_WORKSPACE}" | |
| CCACHE_COMPRESSLEVEL: 6 | |
| CCACHE_COMPRESS: true | |
| CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache" | |
| GH_YML_BASE_OS: macOS | |
| GH_YML_JOBNAME: ${{ matrix.image }}-${{ matrix.compiler }}-${{ matrix.shared }}-${{ matrix.parallel }} | |
| GH_YML_MATRIX_ARCH : ${{ matrix.arch }} | |
| GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} | |
| GH_YML_MATRIX_OS: ${{ matrix.image }} | |
| GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| image: [macos-13, macos-14] | |
| shared: [shared, static] | |
| include: | |
| - image: macos-13 | |
| arch: x64 | |
| compiler: xcode14_2 | |
| - image: macos-14 | |
| arch: arm64 | |
| compiler: xcode15_4 | |
| - parallel: serial | |
| exclude: | |
| - image: macos-13 | |
| shared: static | |
| name: macos (${{ matrix.image }}, ${{ matrix.compiler}}, ${{ matrix.arch }}, ${{ matrix.shared }}, ${{ matrix.parallel }}) | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: gha | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: source | |
| - name: Setup | |
| run: gha/scripts/ci/gh-actions/macos-setup.sh | |
| - name: Restore cache | |
| uses: actions/cache/restore@v4 | |
| id: restore-cache | |
| with: | |
| path: .ccache | |
| key: ccache-${{ matrix.image}}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
| restore-keys: | | |
| ccache-${{ matrix.image }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
| - name: Configure cache | |
| run: ccache -z | |
| - name: Update | |
| run: gha/scripts/ci/gh-actions/run.sh update | |
| - name: Configure | |
| run: gha/scripts/ci/gh-actions/run.sh configure | |
| - name: Build | |
| run: gha/scripts/ci/gh-actions/run.sh build | |
| - name: Print ccache statistics | |
| run: ccache -s | |
| - name: Save cache | |
| uses: actions/cache/save@v4 | |
| if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }} | |
| id: save-cache | |
| with: | |
| path: .ccache | |
| key: ccache-${{ matrix.image }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
| - name: Test | |
| run: gha/scripts/ci/gh-actions/run.sh test | |
| windows: | |
| needs: [format, git_checks] | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ${{ matrix.image }} | |
| env: | |
| GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.shared == 'static' && '-static' || ''}}-${{ matrix.parallel }} | |
| GH_YML_BASE_OS: Windows | |
| GH_YML_MATRIX_OS: ${{ matrix.os }} | |
| GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} | |
| GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [win2019, win2022] | |
| shared: [shared] | |
| parallel: [msmpi] | |
| include: | |
| - os: win2019 | |
| image: windows-2019 | |
| compiler: vs2019 | |
| - os: win2022 | |
| image: windows-2022 | |
| compiler: vs2022 | |
| - os: win2022 | |
| image: windows-2022 | |
| compiler: vs2022 | |
| parallel: serial | |
| - os: win2022 | |
| image: windows-2022 | |
| shared: static | |
| compiler: vs2022 | |
| parallel: serial | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: gha | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: source | |
| - name: Setup | |
| shell: pwsh | |
| run: gha/scripts/ci/gh-actions/windows-setup.ps1 | |
| - name: Update | |
| run: gha/scripts/ci/gh-actions/run.sh update | |
| - name: Configure | |
| run: gha/scripts/ci/gh-actions/run.sh configure | |
| - name: Build | |
| run: gha/scripts/ci/gh-actions/run.sh build | |
| - name: Test | |
| run: gha/scripts/ci/gh-actions/run.sh test | |
| ####################################### | |
| # Docker container jobs | |
| ####################################### | |
| docker: | |
| needs: [format, git_checks] | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| baseos: [ubuntu-bionic] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: ci-source | |
| - name: Re-configure docker daemon | |
| run: | | |
| sudo systemctl stop docker | |
| echo $'{\n "experimental": true\n}' | \ | |
| sudo tee /etc/docker/daemon.json | |
| sudo systemctl start docker | |
| - name: Build image | |
| run: | | |
| docker build \ | |
| --rm --squash \ | |
| -t ornladios/adios2:ci-tmp \ | |
| --build-arg baseos=${{ matrix.baseos }} \ | |
| --build-arg ci_source_dir=ci-source \ | |
| -f ci-source/scripts/ci/images/spack/Dockerfile \ | |
| . | |
| - name: Save image as a tar file | |
| run: | | |
| docker save -o ci-docker.tar ornladios/adios2:ci-tmp | |
| ls -lah ci-docker.tar | |
| - name: Upload | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| retention-days: 1 | |
| name: ci-docker ${{ matrix.baseos }} ${{ github.sha }} | |
| path: ci-docker.tar | |
| - name: Push image to Docker Hub | |
| if: github.event_name == 'push' | |
| env: | |
| DOCKERHUB_USERNAME: ${{ secrets.DOCKERHUB_USERNAME }} | |
| DOCKERHUB_PASSWORD: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| run: | | |
| target_tag="${GITHUB_REF##refs/heads/}-${{ matrix.baseos }}" | |
| docker tag \ | |
| ornladios/adios2:ci-tmp \ | |
| ornladios/adios2:${target_tag} | |
| docker login \ | |
| --username="${DOCKERHUB_USERNAME}" \ | |
| --password="${DOCKERHUB_PASSWORD}" | |
| docker push \ | |
| ornladios/adios2:${target_tag} | |
| ####################################### | |
| # Contract testing jobs | |
| ####################################### | |
| # These contract testing jobs use the container built in the previous | |
| # docker job and runs it in a way similar to how a typical GitHub | |
| # Actions container job does. Using the "messy" default shell for | |
| # run steps lets the steps be written as though they too were using a | |
| # standard container job. | |
| contract: | |
| needs: [format, git_checks, docker] | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| code: [examples, lammps, tau] | |
| include: | |
| - code: examples | |
| - code: lammps | |
| repo: pnorbert/lammps | |
| ref: fix-deprecated-adios-init | |
| - code: tau | |
| defaults: | |
| run: | |
| shell: bash -c "docker exec adios2-ci bash --login -e $(echo {0} | sed 's|/home/runner/work|/__w|g')" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| if: ${{ matrix.repo != '' }} | |
| with: | |
| repository: ${{ matrix.repo }} | |
| ref: ${{ matrix.ref }} | |
| path: source | |
| - name: Download CI docker image | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: ci-docker ubuntu-bionic ${{ github.sha }} | |
| - name: Initialize containers | |
| shell: bash -e {0} | |
| run: | | |
| sudo chown 1000:1000 . | |
| docker load -i ci-docker.tar | |
| docker create \ | |
| --name adios2-ci --workdir /__w/ADIOS2/ADIOS2 \ | |
| -v "/home/runner/work":"/__w" \ | |
| --entrypoint "tail" ornladios/adios2:ci-tmp \ | |
| "-f" "/dev/null" | |
| docker start adios2-ci | |
| - name: Dependencies | |
| run: /opt/adios2/source/testing/contract/${{ matrix.code }}/depends.sh | |
| - name: Configure | |
| run: /opt/adios2/source/testing/contract/${{ matrix.code }}/config.sh | |
| - name: Build | |
| run: /opt/adios2/source/testing/contract/${{ matrix.code }}/build.sh | |
| - name: Install | |
| run: /opt/adios2/source/testing/contract/${{ matrix.code }}/install.sh | |
| - name: Test | |
| run: /opt/adios2/source/testing/contract/${{ matrix.code }}/test.sh | |
| ####################################### | |
| # Code analysis builds | |
| ####################################### | |
| analyze: | |
| needs: [format, git_checks] | |
| name: CodeQL | |
| runs-on: ubuntu-latest | |
| container: | |
| image: 'ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8' | |
| env: | |
| GH_YML_JOBNAME: ubuntu20.04-gcc8-serial-codeql | |
| GH_YML_BASE_OS: Linux | |
| GH_YML_MATRIX_OS: ubuntu20.04 | |
| GH_YML_MATRIX_COMPILER: gcc8 | |
| GH_YML_MATRIX_PARALLEL: serial | |
| permissions: | |
| actions: read | |
| contents: read | |
| security-events: write | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| language: [ 'cpp' ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: gha | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: source | |
| - name: Initialize CodeQL | |
| uses: github/codeql-action/init@v3 | |
| with: | |
| languages: ${{ matrix.language }} | |
| config: | | |
| paths: | |
| - source | |
| paths-ignore: | |
| - source/thirdparty | |
| - name: Setup | |
| run: gha/scripts/ci/gh-actions/linux-setup.sh | |
| - name: Update | |
| run: gha/scripts/ci/gh-actions/run.sh update | |
| - name: Configure | |
| run: gha/scripts/ci/gh-actions/run.sh configure | |
| - name: Build | |
| run: gha/scripts/ci/gh-actions/run.sh build | |
| - name: Perform CodeQL Analysis | |
| uses: github/codeql-action/analyze@v3 | |
| with: | |
| category: "/language:${{matrix.language}}" | |
| ####################################### | |
| # Workaround for skipping matrix jobs | |
| ####################################### | |
| build_and_test: | |
| needs: [el8, ubuntu, macos, docker, contract] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: echo "All required jobs complete" |