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add a few more tests around rank deficiency #98

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Jul 16, 2024
Merged

add a few more tests around rank deficiency #98

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66156b2
add a few more tests around rank deficiency
palday Jul 11, 2024
b55c2d1
Update test/utils_and_types.jl
palday Jul 16, 2024
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9 changes: 5 additions & 4 deletions test/runtests.jl
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Original file line number Diff line number Diff line change
Expand Up @@ -44,10 +44,11 @@ g1 = fit(MixedModel,

rng = MersenneTwister(0)
x = rand(rng, 100)
data = (x=x, x2=1.5 .* x, y=rand(rng, [0, 1], 100), z=repeat('A':'T', 5))
mr = @suppress fit(MixedModel, @formula(y ~ x + x2 + (1 | z)), data; progress)
br = parametricbootstrap(MersenneTwister(42), 500, mr; progress,
optsum_overrides=(; ftol_rel=1e-6))
a = rand(rng, 100)
data = (; x, x2=1.5 .* x, a, y=rand(rng, [0, 1], 100), g=repeat('A':'T', 5))
mr = @suppress fit(MixedModel, @formula(y ~ a + x + x2 + (1 | g)), data; progress)
br = @suppress parametricbootstrap(MersenneTwister(42), 500, mr; progress,
optsum_overrides=(; ftol_rel=1e-6))

@testset ExtendedTestSet "MixedModelsMakie.jl" begin
@testset "Aqua" begin
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6 changes: 6 additions & 0 deletions test/utils_and_types.jl
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Expand Up @@ -33,6 +33,12 @@ m1 = fit(MixedModel,
@test wald.estimate ≈ boot.estimate rtol = 0.05
@test wald.lower ≈ boot.lower rtol = 0.05
@test wald.upper ≈ boot.upper rtol = 0.05

@test all(splat(isapprox),
zip(MixedModelsMakie.confint_table(mr).estimate, fixef(mr)))

@test fixefnames(mr) == MixedModelsMakie.confint_table(mr).coefname
@test fixefnames(mr) == MixedModelsMakie.confint_table(br).coefname
end

@testset "ranefinfo" begin
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