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@pangenome

pangenome

graphical pangenomic methods

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  1. pggb pggb Public

    the pangenome graph builder

    Shell 368 41

  2. odgi odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    C++ 194 39

  3. impg impg Public

    implicit pangenome graph

    Rust 41 5

  4. smoothxg smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    C++ 56 6

Repositories

Showing 10 of 62 repositories
  • HumanPangenomeBYODAnaylsisWorkshop2024 Public

    elwazi - Human Pangenome "Bring Your Own Data" analysis Workshop 2024

    pangenome/HumanPangenomeBYODAnaylsisWorkshop2024’s past year of commit activity
    0 MIT 0 0 0 Updated Oct 19, 2024
  • genotypify Public

    Genotyping lots of samples with big pangenomes

    pangenome/genotypify’s past year of commit activity
    5 MIT 0 0 0 Updated Oct 18, 2024
  • pggb Public

    the pangenome graph builder

    pangenome/pggb’s past year of commit activity
    Shell 368 MIT 41 33 0 Updated Oct 16, 2024
  • smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    pangenome/smoothxg’s past year of commit activity
    C++ 56 6 7 1 Updated Oct 15, 2024
  • odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    pangenome/odgi’s past year of commit activity
    C++ 194 MIT 39 42 (1 issue needs help) 7 Updated Oct 15, 2024
  • gafpack Public

    convert variation graph alignments to coverage maps over nodes

    pangenome/gafpack’s past year of commit activity
    Rust 20 MIT 2 0 1 Updated Oct 14, 2024
  • PanSN-spec Public

    Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes

    pangenome/PanSN-spec’s past year of commit activity
    31 1 3 1 Updated Oct 13, 2024
  • impg Public

    implicit pangenome graph

    pangenome/impg’s past year of commit activity
    Rust 41 MIT 5 2 1 Updated Oct 9, 2024
  • lifetree Public

    hard mode all genomes alignment

    pangenome/lifetree’s past year of commit activity
    Shell 5 2 0 0 Updated Sep 3, 2024
  • povu Public
    pangenome/povu’s past year of commit activity
    C++ 10 MIT 1 1 0 Updated Aug 13, 2024
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