Translating path coordinates to flattened pangenome coordinates

[gputzel]

I have a pangenome with two paths, from which I have created a flattened pangenome (FASTA file) using odgi flatten. I also have a bed file with feature coordinates specific to a path. I understand that using odgi position I can translate those coordinates into pangenome coordinates (node, offset, strand). Is there a way to convert those, in turn, into coordinates associated with the flattened pangenome generated by odgi flatten?

[subwaystation]

As far as I understood, the output of odgi flatten is the pangenomic sequence. And you want to translate a given path and nucleotide position to a pangenome position. You can do this with odgi panpos. First build a path index using odgi pathindex. Then you can feed this and the graph into odgi panpos.
There also exists odgi server where the idea is to keep the graph and the index in memory all the time so you can ask such queries without the I/O overloads of odgi panpos.