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sdmTMB 0.4.0

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@seananderson seananderson released this 20 Oct 18:16
  • Move add_barrier_mesh() to sdmTMBextra to avoid final INLA dependency.
    https://github.com/pbs-assess/sdmTMBextra

  • Switch to using the new fmesher package for all mesh/SPDE calculations. INLA
    is no longer a dependency.

  • Switch to diagonal.penalty = FALSE in mgcv::smoothCon().
    This changes the scale of the linear component of the smoother, but
    should result in the same model.
    glmmTMB/glmmTMB#928 (comment)

  • Implement cross validation for delta models #239

  • Remove ELPD from cross validation output. Use sum_loglik instead. #235

  • Turn on Newton optimization by default. #182

  • print() now checks sanity() and issues a warning if there may be issues. #176

  • Poisson-link delta models and censored likelihood distributions have been made
    considerably more robust. #186

  • Standard errors are now available on SD parameters etc. in tidy() #240

  • Fix bug in print()/tidy() for delta-model positive model component sigma_E.
    A recently introduce bug was causing sigma_E for the 2nd model to be reported
    as the 1st model component sigma_E.

  • Add new anisotropy plotting function.

  • Add anisotropic range printing. #149 by @jdunic