forked from DongqingSun96/TISCH
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathscRNA_DC_mannual_latest_beta.txt
81 lines (81 loc) · 15.2 KB
/
scRNA_DC_mannual_latest_beta.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
AEL_GSE142213 AEL 10x Genomics 2 3994 Di Genua C, et al. Cancer Cell 2020 32330454 GSE142213 TME Human Malignant, Mono/Macro, NK, Plasma Primary None None
AEL_GSE142213_mouse AEL 10x Genomics 2 9595 Di Genua C, et al. Cancer Cell 2020 32330454 GSE142213 TME Mouse Malignant, Mono/Macro, Neutrophils, NK Primary None None
ALL_GSE132509 ALL 10x Genomics 11 37936 Caron M, et al. Sci Rep 2020 32415257 GSE132509 TME Human B, CD4Tconv, CD8T, Erythrocytes, Malignant, Mono/Macro, TMKI67 Primary None None
AML_GSE116256 AML Smart-seq2 21 38348 De Bie J, et al. Leukemia 2018 29740158 GSE116256 TME Human B, CD4Tconv, CD8T, EryPro, GMP, HSC, Malignant, Mono/Macro, NK, Plasma, Progenitor, Promonocyte, TMKI67 Primary None None
AML_GSE147989 AML 10x Genomics 2 7389 NA NA GSE147989 TME Human HSC Primary Targeted therapy Targeted therapy (Cusatuzumab)
BCC_GSE123813_aPD1 BCC 10x Genomics 11 52884 Yost KE, et al. Nat Med 2019 31359002 GSE123813 ICB Human B, CD4Tconv, CD8T, CD8Tex, DC, Endothelial, Fibroblasts, Malignant, Mast, Melanocytes, Mono/Macro, Myofibroblasts, NK, Plasma, TMKI67, Treg, pDC Metastatic Immunotherapy aPD1
BLCA_GSE130001 BLCA 10x Genomics 2 4129 Wang L, et al. Genome Med 2020 32111252 GSE130001 TME Human Endothelial, Epithelial, Fibroblasts, Myofibroblasts Primary None None
BLCA_GSE145281_aPD1 BLCA 10x Genomics 10 14462 Yuen KC, et al. Nat Medicine 2020 32405063 GSE145281 ICB Human B, CD4Tconv, CD8T, DC, Mono/Macro, NK Metastatic Immunotherapy aPD1
BRCA_Alex BRCA 10x Genomics 26 89471 NA NA NA TME Human B, CD4Tconv, CD8Tex, Endothelial, Fibroblasts, Malignant, Mono/Macro, Plasma, SMC, TMKI67, pDC Primary None None
BRCA_GSE110686 BRCA (TNBC) 10x Genomics 2 6035 Savas P, et al. Nat Med 2018 29942092 GSE110686 TME Human CD4Tconv, CD8T, CD8Tex, Mono/Macro, TMKI67, Treg Primary, Metastatic None None
BRCA_GSE114727_10X BRCA 10x Genomics 3 28678 Azizi E, et al. Cell 2018 29961579 GSE114727 TME Human CD4Tconv, CD8T, CD8Tex, TMKI67, Treg Primary None None
BRCA_GSE114727_inDrop BRCA inDrop 8 19676 Azizi E, et al. Cell 2018 29961579 GSE114727 TME Human B, CD4Tconv, CD8T, CD8Tex, DC, Endothelial, Fibroblasts, Mast, Mono/Macro, Myofibroblasts, NK, TMKI67, Treg, pDC Primary None None
BRCA_GSE136206_mouse_aPD1aCTLA4 BRCA 10x Genomics NA 27532 Hollern DP, et al. Cell 2019 31730857 GSE136206 ICB Mouse B, CD4Tconv, CD8T, CD8Tex, DC, Endothelial, Malignant, Mono/Macro, NK, Neutrophils, Plasma, TMKI67 Primary Immunotherapy aPD1 + aCTLA4
BRCA_GSE138536 BRCA Smart-seq2 8 1902 Gulati GS, et al. Science 2020 31974247 GSE138536 TME Human Epithelial, Fibroblasts, Mono/Macro, Myofibroblasts Primary None None
BRCA_GSE143423 BRCA 10x Genomics 2 4375 Weilin Jin, et al. Preprint GSE143423 TME Human Malignant, Mono/Macro, Oligodendrocyte Metastatic None None
BRCA_SRP114962 BRCA SNRS 8 2472 Kim C, et al. Cell 2018 29681456 SRP114962 TME Human CD8Tex, Malignant Primary Chemotherapy Chemotherapy
CHOL_GSE125449_aPD1aPDL1aCTLA4 CHOL 10x Genomics 10 5761 Lichun Ma, et al. Cancer Cell 2019 31588021 GSE125449 ICB Human B, CD4Tconv, CD8T, CD8Tex, Endothelial, Fibroblasts, Hepatic progenitor, Malignant, Mono/Macro, Plasma, TMKI67 Primary Immunotherapy aPD1 + aPDL1 + aCTLA4
CLL_GSE111014 CLL 10x Genomics 4 30106 Rendeiro AF, et al. Nat Commun 2020 31996669 GSE111014 TME Human B, CD4Tconv, CD8T, Mono/Macro, pDC, TMKI67 Primary Targeted therapy Targeted therapy (Ibrutinib)
CLL_GSE125881 CLL, NHL 10x Genomics 4 60528 Sheih A, et al. Nat Commun 2020 31924795 GSE125881 TME Human CD8T, CD8Tex, TMKI67 Primary Immunotherapy Adoptive cell therapy (CAR-T)
COAD_GSE108989 COAD Smart-seq2 12 11125 Zhang L, et al. Nature 2018 30479382 GSE108989 TME Human CD4Tconv, CD8T, CD8Tex, TMKI67, Treg Primary None None
COAD_GSE112865_mouse_aPD1 COAD 10x Genomics NA 4454 Arlauckas SP, et al. Theranostics 2018 30613266 GSE112865 ICB Mouse CD4Tconv, CD8T, CD8Tex, DC, Mono/Macro, NK, Neutrophils, TMKI67, pDC Primary Immunotherapy aPD1
COAD_GSE120909_mouse_aPD1 COAD Smart-seq NA 1881 Wang B, et al. Sci Immunol 2018 30389797 GSE120909 ICB Mouse CD8T, CD8Tex, DC, Mono/Macro, Neutrophils, pDC Primary Immunotherapy aPD1
COAD_GSE122969_mouse_aPD1aTIM3 COAD 10x Genomics NA 5457 Kurtulus S, et al. Immunity 2019 30635236 GSE122969 ICB Mouse CD8T, CD8Tex, Fibroblasts, Mono/Macro, TMKI67, pDC Primary Immunotherapy aPD1 + aTIM3
COAD_GSE136394 COAD, READ 10x Genomics 5 67171 Lu YC, et al.Cancer Immunol Res 2019 31484655 GSE136394 TME Human CD4Tconv, CD8T, Mono/Macro, TMKI67 Primary, Metastatic Immunotherapy Adoptive cell therapy (TIL)
COAD_GSE139555 COAD 10x Genomics 2 10112 Wu TD, et al. Nature 2020 32103181 GSE139555 TME Human B, CD4Tconv, CD8T, CD8Tex, Mast, Mono/Macro, Myofibroblasts, NK, Plasma, TMKI67, Treg Primary None None
COAD_GSE146771_10X COAD 10x Genomics 10 43817 Zhang L, et al. Cell 2020 32302573 GSE146771 TME Human B, CD4Tconv, CD8T, CD8Tex, Mast, Mono/Macro, TMKI67 Primary None None
COAD_GSE146771_Smartseq2 COAD Smart-seq2 10 10468 Zhang L, et al. Cell 2020 32302573 GSE146771 TME Human B, CD4Tconv, CD8T, CD8Tex, Fibroblasts, Malignant, Mast, Mono/Macro, NK, TMKI67, Treg Primary None None
GBM_GSE102130 GBM Smart-seq2 6 3321 Filbin MG, et al. Science 2018 29674595 GSE102130 TME Human AC-like Malignant, Mono/Macro, OC-like Malignant, OPC-like Malignant, Oligodendrocyte Primary None None
GBM_GSE103224 GBM Microwell 8 17185 Yuan J, et al. Genome Med 2018 30041684 GSE103224 TME Human AC-like Malignant, Endothelial, Mono/Macro, NB-like Malignant, Neuron, OC-like Malignant, OPC-like Malignant Primary None None
GBM_GSE131928_10X GBM 10x Genomics 9 13553 Neftel C, et al. Cell 2019 31327527 GSE131928 TME Human AC-like Malignant, CD8Tex, Malignant, Mono/Macro, Oligodendrocyte, OPC-like Malignant Primary None None
GBM_GSE131928_Smartseq2 GBM Smart-seq2 28 7930 Neftel C, et al. Cell 2019 31327527 GSE131928 TME Human AC-like Malignant, CD8T, CD8Tex, Malignant, Oligodendrocyte, OPC-like Malignant Primary None None
GBM_GSE135437 GBM mCEL-Seq2 19 12559 Sankowski R, et al. Nat Neurosci 2019 31740814 GSE135437 TME Human CD8T, Microglia, Mono/Macro, Oligodendrocyte Primary, Metastatic None None
GBM_GSE138794 GBM 10x Genomics 9 18458 Wang L, et al. Cancer Discov 2019 31554641 GSE138794 TME Human Astrocyte, Endothelial, Malignant, Mono/Macro, Oligodendrocyte Primary None None
GBM_GSE139448 GBM 10x Genomics 3 12152 Wang R, et al. Stem Cell Reports 2020 32004492 GSE139448 TME Human Endothelial, Malignant, Mast, Mono/Macro Primary None None
GBM_GSE141982 GBM 10x Genomics 2 5263 Wang L, et al. Bioinformatics 2020 32105316 GSE141982 TME Human CD8T, Endothelial, Malignant, Mono/Macro Primary None None
GBM_GSE148842 GBM Microwell 7 111397 NA Preprint GSE148842 TME Human AC-like Malignant, CD8Tex, Malignant, Mono/Macro, Oligodendrocyte, Others Primary None None
GBM_GSE70630 GBM Smart-seq2 6 4347 Tirosh I, et al. Nature 2016 27806376 GSE70630 TME Human AC-like Malignant, Mono/Macro, OC-like Malignant, Oligodendrocyte Primary None None
GBM_GSE84465 GBM Smart-seq2 4 3533 Darmanis S, et al. Cell Rep 2017 29091775 GSE84465 TME Human AC-like Malignant, Astrocyte, Malignant, Mono/Macro, Neuron, OPC, Oligodendrocyte, Vascular Primary None None
GBM_GSE89567 GBM Smart-seq2 10 6341 Venteicher AS, et al. Science 2017 28360267 GSE89567 TME Human AC-like Malignant, Mono/Macro, OC-like Malignant, Oligodendrocyte Primary None None
HNSC_GSE103322 HNSC Smart-seq2 18 5902 Puram SV, et al. Cell 2018 29198524 GSE103322 TME Human CD4Tconv, CD8T, CD8Tex, Endothelial, Fibroblasts, Malignant, Mast, Mono/Macro, Myfibroblasts, Myocyte, Plasma Primary None None
HNSC_GSE139324 HNSC 10x Genomics 26 130721 Cillo AR, et al. Immunity 2020 31924475 GSE139324 TME Human B, CD4Tconv, CD8T, CD8Tex, Mast, Mono/Macro, NK, Plasma, TMKI67, Treg, pDC Primary None None
KIRC_GSE111360 KIRC 10x Genomics 2 23130 Neal JT, et al. Cell 2018 30550791 GSE111360 TME Human B, CD4Tconv, CD8T, CD8Tex, DC, Fibroblasts, Mast, Mono/Macro, NK, Plasma, TMKI67, Treg Primary None None
KIRC_GSE139555 KIRC 10x Genomics 3 49907 Wu TD, et al. Nature 2020 32103181 GSE139556 TME Human B, CD4Tconv, CD8T, CD8Tex, DC, Endothelial, Mast, Mono/Macro, NK, Plasma, TMKI67, pDC Primary None None
KIRC_GSE145281_aPD1 KIRC 10x Genomics 4 44220 Yuen KC, et al. Nat Medicine 2020 32405063 GSE145281 ICB Human B, CD4Tconv, CD8T, DC, Mono/Macro, Myofibroblasts, NK, Plasma Metastatic Immunotherapy aPD1
LIHC_GSE125449_aPDL1aCTLA4 LIHC 10x Genomics 9 3834 Ma L, et al.Cancer Cell 2019 31588021 GSE125449 ICB Human B, CD8Tex, Endothelial, Fibroblasts, Hepatic progenitor, Malignant, Mono/Macro, Plasma Primary Immunotherapy aPDL1 + aCTLA4
LIHC_GSE140228_10X LIHC 10x Genomics 5 62530 Zhang Q, et al. Cell 2019 31675496 GSE140228 TME Human B, CD4Tconv, CD8T, CD8Tex, DC, ILC, Mast, Mono/Macro, NK, Plasma, TMKI67, Treg Primary None None
LIHC_GSE140228_Smartseq2 LIHC Smart-seq2 6 7074 Zhang Q, et al. Cell 2019 31675496 GSE140228 TME Human B, CD4Tconv, CD8Tex, DC, ILC, Mast, Mono/Macro, NK, Plasma, TMKI67 Primary None None
LIHC_GSE98638 LIHC Smart-seq2 6 5059 Zheng C, et al. Cell 2017 28622514 GSE98638 TME Human CD4Tconv, CD8T, CD8Tex, Others, TMKI67, Treg Primary None None
MB_GSE119926 MB Smart-seq2 25 7745 Hovestadt V, et al. Nature 2019 31341285 GSE119926 TME Human Fibroblasts, Malignant, TMKI67 Primary, Metastatic None None
MCC_GSE117988_aPD1aCTLA4 MCC 10x Genomics 1 10134 Paulson KG et al. Nat Commun 2018 30250229 GSE117988 ICB Human B, CD4Tconv, CD8T, CD8Tex, Fibroblasts, Malignant, Mono/Macro, Others Metastatic Immunotherapy T cell therapy, aPD1 + aCTLA4
MCC_GSE118056_aPDL1 MCC 10x Genomics 1 11024 Paulson KG, et al. Nat Commun 2018 30250229 GSE118056 ICB Human B, CD4Tconv, CD8T, Malignant, Mono/Macro, Myofibroblasts, NK, Others, pDC, TMKI67, Treg Primary Immunotherapy T cell therapy, aPDL1
MM_GSE117156 MM MARS-seq 14 24918 Ledergor G, et al. Nat Med 2018 30523328 GSE117156 TME Human CD8T, Malignant, Mono/Macro, Plasma Primary Targeted therapy Targeted therapy (Bortezomib)
MM_GSE141299 MM 10x Genomics 7 16840 NA NA GSE141299 TME Human Malignant Primary None None
NET_GSE140312 NET 10x Genomics 1 3158 Rao M, et al. Cold Spring Harb Mol Case Stud 2020 32054662 GSE140312 TME Human Endothelial, Fibroblasts, Mono/Macro, Myofibroblasts, Others Primary, Metastatic None None
NHL_GSE128531 NHL 10x Genomics 9 30497 Gaydosik AM, et al. Clin Cancer Res 2019 31010835 GSE128531 TME Human B, CD4Tconv, CD8Tex, Endothelial, Fibroblasts, Keratinocytes, Melanocytes, Mono/Macro, NK, Others, Pericytes, Secretory glandular, SMC, TMKI67 Primary None None
NSCLC_EMTAB6149 NSCLC 10x Genomics 5 40218 Lambrechts D, et al. Nat Med 2018 29988129 EMTAB6149 TME Human Alveolar, B, CD4Tconv, CD8T, CD8Tex, Endothelial, Fibroblasts, Malignant, Mast, Mono/Macro, Plasma, Treg Primary None None
NSCLC_GSE117570 NSCLC 10x Genomics 4 11453 Song Q, et al. Cancer Med 2019 31033233 GSE117570 TME Human B, CD4Tconv, CD8T, DC, Endothelial, Malignant, Mast, Mono/Macro, Myofibroblasts, NK, Plasma Primary None None
NSCLC_GSE127465 NSCLC Smart-seq2 7 31179 Zilionis R, et al. Immunity 2019 30979687 GSE127465 TME Human B, CD4Tconv, CD8Tex, DC, Endothelial, Fibroblasts, Malignant, Mast, Mono/Macro, NK, Neutrophils, Plasma Primary None None
NSCLC_GSE127471 NSCLC 10x Genomics 1 1108 Newman AM, et al. Nat Biotechnol 2019 31061481 GSE127471 TME Human B, CD4Tconv, CD8T, CD8Tex, Mono/Macro, NK, Others Primary None None
NSCLC_GSE131907 NSCLC 10x Genomics 44 203298 Kim N, et al. Nat Commun 2020 32385277 GSE131907 TME Human B, CD4Tconv, CD8T, CD8Tex, DC, Endothelial, Epithelial, Fibroblasts, Mast, Mono/Macro, Oligodendrocyte, pDC, Plasma Primary, Metastatic None None
NSCLC_GSE139555 NSCLC 10x Genomics 6 78829 Wu TD, et al. Nature 2020 32103181 GSE139557 TME Human B, CD4Tconv, CD8T, CD8Tex, DC, Mono/Macro, Myofibroblasts, Plasma, TMKI67, Treg, pDC Primary None None
NSCLC_GSE143423 NSCLC 10x Genomics 3 12193 Wang L, et al. Preprint GSE143423 TME Human CD8T, Endothelial, Malignant, Mono/Macro, Oligodendrocyte, Pericytes, Plasma Metastatic None None
NSCLC_GSE99254 NSCLC Smart-seq2 14 12346 Guo X, et al. Nat Med 2018 29942094 GSE99254 TME Human CD4Tconv, CD8T, CD8Tex, Mono/Macro, TMKI67, Treg Primary None None
OV_GSE115007 OV 10x Genomics 1 6000 Tang-Huau TL, et al. Nat Commun 2018 29967419 GSE115007 TME Human DC, Mono/Macro, Plasma Primary None None
OV_GSE118828 OV Smart-seq2 9 1909 Shih AJ, et al. PLoS One 2018 30383866 GSE118828 TME Human CD4Tconv, Endothelial, Fibroblasts, Malignant, Mono/Macro, Myofibroblasts Primary, Metastatic None None
PAAD_CRA001160 PAAD (PDAC) 10x Genomics 35 57443 Peng J, et al. Cell Res 2019 31273297 CRA001160 TME Human Acinar, B, CD8Tex, Ductal, Endocrine, Endothelial, Fibroblasts, Malignant, Mono/Macro, Plasma, Stellate, pDC Primary None None
PAAD_GSE111672 PAAD inDrop 3 6122 Moncada R, et al. Nat Biotechnol 2020 31932730 GSE111672 TME Human Acinar, CD8T, Ductal, Endothelial, Fibroblasts, Malignant, Mast, Mono/Macro, Neutrophils, Others, TMKI67 Primary None None
PBMC_30K_10X PBMC 10x Genomics 1 29079 NA NA NA Normal Human B, CD4Tconv, CD8T, DC, Mono/Macro, NK, pDC, Plasma, TMKI67 Normal None None
PBMC_60K_10X PBMC 10x Genomics 1 63628 NA NA NA Normal Human B, CD4Tconv, CD8T, DC, Mono/Macro, NK, pDC Normal None None
PBMC_8K_10X PBMC 10x Genomics 1 8488 NA NA NA Normal Human B, CD4Tconv, CD8T, DC, Mono/Macro, NK, pDC Normal None None
SARC_GSE119352_mouse_aPD1aCTLA4 SARC 10x Genomics NA 13789 Gubin MM, et al. Cell 2018 30343900 GSE119352 ICB Mouse CD4Tconv, CD8T, DC, Fibroblasts, Mono/Macro, NK, TMKI67, pDC Primary Immunotherapy aPD1 + aCTLA4
SCC_GSE123813_aPD1 SCC 10x Genomics 4 25891 Yost KE, et al. Nat Med 2019 31359002 GSE123813 ICB Human CD4Tconv, CD8T, CD8Tex, TMKI67, Treg Metastatic Immunotherapy aPD1
SKCM_GSE115978_aPD1 SKCM Smart-seq2 31 7186 Jerby-Arnon L, et al. Cell 2018 30388455 GSE115978 ICB Human B, CD4Tconv, CD8Tex, Endothelial, Fibroblasts, Malignant, Mono/Macro, NK, TMKI67 Primary, Metastatic Immunotherapy aPD1
SKCM_GSE120575_aPD1aCTLA4 SKCM Smart-seq2 48 16291 Sade-Feldman M, et al. Cell 2018 30388456 GSE120575 ICB Human B, CD4Tconv, CD8T, CD8Tex, Mono/Macro, NK, Plasma, TMKI67, Treg, pDC Metastatic Immunotherapy aPD1 + aCTLA4
SKCM_GSE123139 SKCM MARS-seq 25 35494 Li H, et al. Cell 2019 30595452 GSE123139 TME Human B, CD4Tconv, CD8Tex, DC, Fibroblasts, Mono/Macro, Plasma, TMKI67, pDC Primary, Metastatic None None
SKCM_GSE139249 SKCM 10x Genomics 4 39884 de Andrade LF, et al. JCI Insight 2019 31801909 GSE139249 TME Human B, CD4Tconv, CD8Tex, Mono/Macro, Myofibroblasts, NK, Treg, pDC Metastatic None None
SKCM_GSE148190 SKCM 10x Genomics 3 27834 NA NA GSE148190 TME Human B, CD4Tconv, CD8T, CD8Tex, Mono/Macro, NK, Others, Treg Metastatic None None
SKCM_GSE72056 SKCM Smart-seq2 19 4645 Tirosh I, et al. Science 2016 27124452 GSE72056 TME Human B, CD4Tconv, CD8Tex, Endothelial, Fibroblasts, Malignant, Mono/Macro, TMKI67 Metastatic None None
STAD_GSE134520 STAD 10x Genomics 13 41554 Zhang P, et al. Cell 2019 31067475 GSE134520 TME Human CD8T, DC, Fibroblasts, Gland mucous, Malignant, Mast, Myofibroblasts, Pit mucous, Plasma Primary None None
UCEC_GSE139555 UCEC 10x Genomics 3 12758 Wu TD, et al. Nature 2020 32103181 GSE139558 TME Human CD4Tconv, CD8T, CD8Tex, Fibroblasts, TMKI67, Treg Primary None None
UVM_GSE139829 UVM 10x Genomics 11 103703 Durante MA, et al. Nat Commun 2020 31980621 GSE139829 TME Human B, CD4Tconv, CD8T, CD8Tex, Endothelial, Malignant, Mono/Macro, Plasma Primary, Metastatic None None