Fixed EC errors

modules/local/append_clusters/main.nf

@@ -32,7 +32,7 @@ process APPEND_CLUSTERS {
         echo "Error: Address levels do not match between initial_clusters and --db_clusters."
         exit 1
     fi
-   
+
     # Add a "source" column to differentiate the reference profiles and additional profiles
     csvtk mutate2 -t -n source -e " 'ref' " ${initial_clusters} > reference_clusters_source.tsv
     csvtk mutate2 -t -n source -e " 'db' " ${additional_clusters} > additional_clusters_source.tsv

modules/local/cluster_file/main.nf

@@ -24,14 +24,14 @@ process CLUSTER_FILE {
     }
 
     // Generate the header for the expected_clusters.txt file
-    def header = ["id", "address"] 
+    def header = ["id", "address"]
     outputLines << header.join("\t")
 
     // Iterate over each sample in the meta list and pull the relevant information for the text file
     meta.each { sample ->
         def id = sample.id
         def address = sample.address
-        def line = [id, address] 
+        def line = [id, address]
         outputLines << line.join("\t")
     }
 

tests/data/databases/additional_clusters_loci.tsv

@@ -2,4 +2,3 @@ id	address
 sampleA	1.1.1.1
 sampleB	1.1.2.1
 sampleC	2.1.1.1
-