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Update README
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kylacochrane committed Nov 1, 2024
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Expand Up @@ -98,11 +98,11 @@ Note that any address levels present in the additional databases but absent from
- `--db_clusters`: Specifies the path to the database containing cluster addresses for additional samples in tab-separated format. To ensure compatibility, the database structure must adhere to the expected header format corresponding to the samples included in the input samplesheet:
| id | address | level_1 | level_2 | ... | level_n |
| ------- | ------- | ------- | ------- | --- | ------- |
| sampleA | 1.1.1 | 1 | 1 | ... | 1 |
| sampleB | 1.1.2 | 1 | 1 | ... | 2 |
| sampleC | 2.1.1 | 2 | 1 | ... | 1 |
| id | address |
| ------- | ------- |
| sampleA | 1.1.1 |
| sampleB | 1.1.2 |
| sampleC | 2.1.1 |
_Note: To add additional reference samples to the pipeline, both `--db_profiles` and `--db_clusters` must be provided together, and all `sample_id`'s in `--db_profiles` must match the `id`'s in `--db_clusters`_
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