Skip to content

[0.4.0] - 2024-09-04 Back to School
Compare
Choose a tag to compare
@mattheww95 mattheww95 released this 04 Sep 21:35
· 107 commits to main since this release
0.4.0
c32ce85
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.

[0.4.0] - 2024-09-04

Changed

  • Removed quay.io docker repo tags PR 94

Updated

  • Added QCMessage and QCSummary fields for metagenomic sequencing runs. See PR 103

  • Updated TSeemann's MLST default container to use version 2.23.0 of mlst. See PR 97

  • Moved allele schema parameters under one option in the nextflow_schema.json. See PR 104

Fixed

  • Fixed typo in metagenomic QC message. See PR 103

  • Fixed spelling issues issues in config values. See PR 95

  • Fixed the headers specified in the nextflow.config file for Kraken2. See PR 96

Added

  • Added additional organism QC parameters to defaults. See PR 105

  • Updated locidex to version 0.2.3. See PR 96

  • Added module for automatic selection of locidex databases through configuration of a locidex database collection. See PR 96

  • Added module for summary of basic allele metrics, listing of missing alleles and reporting of specific alleles. See PR 96

A lot of changes were made in this release thanks to the help of many people:

  • @apetkau for his feedback, code reviews and ability to trouble shoot bugs and errors 🐛 🦅
  • @kylacochrane for code reviews, feedback and improvements of the locidex_select.nf module. The code is now a lot more groovy💃⚡
  • @emarinier for code reviews, discussions, feedback and suggestions on the locidex_select.nf module. 🤖 🍻
  • @sgsutcliffe for integrating support of alternative container registries 🚀 🧪

Contributors

apetkau, emarinier, and 2 other contributors
Assets 2
Loading