v0.2.0-beta.6

0.2.0-beta.6 (2024-01-24)

Features

• bazel: add aspect lib (512e127)
• bazel: add xdoctest macro (b39b26e)
• bazel: generate pip-compile requirements (e38acf6)
• bazel: use all_requirements for package library (165b84a)
• data: validate urls and file size before download attempt (b9b6f0b)
• main_workflow: setup download_data task (9cfdcce)
• make: add pydeps target to render graph (ff2e8b3)
• pypi: add cpu-only requirements (cbb95d6)
• vscode: add fileutils (e5dfb0a)
• workflows: add main workflow (153e12c)

Bug Fixes

• bazel: add aspect lib to root rc (b661bff)
• bazel: add ci configs (9c15b5a)
• bazel: move py_library to workspace-level for xdoctest (29a3a7f)
• bazel: remove platform-specific requirements (bfeab1b)
• bazel: set target platforms "all" (3ab6152)
• bazel: use cpu requirements (a040872)
• bazel: use py_test from rules_python in py_test_module_list (fffb0d6)
• bazel: use requirements-bazel.txt (d7f3969)
• bazel: use standard pip hub name (d027451)
• cid: add actions cache for bazel (85a6576)
• cid: cache cpu requirements (4e1b37c)
• cid: check cache for requirements or regenerate (3109d5e)
• cid: check disk usage (db2e99e)
• cid: disable lock-bazel (1407ea1)
• cid: lock-bazel before tests (f53b8f8)
• cid: reenable execute-workflow dep on image builds (#502) (c00124e)
• cid: save updated requirements artifact (793b1c7)
• cid: use bazel make targets (a46d544)
• cid: use test-python job name (0b3226f)
• cspell: add cytotrace (2fb9099)
• cspell: add scanpy (f9002ac)
• cspell: add type checking (e027023)
• data: use string inputs for download_dataset (887768a)
• gitignore: mlflow and data (fee99ec)
• make: add bazel targets (0f7b882)
• make: add debug and nodocs test targets (2f83b83)
• make: add targets to export cpu requirements (fe5e09d)
• make: cache requirements with lock-bazel (84f155d)
• make: do not lock bazel by default (276cffb)
• make: update pydeps exclusions (901115b)
• make: use correct requirements file with test-bazel (59f0514)
• mergify: update check-success job names (87c51bf)
• pyproject: add block to export cpu requirements (09951dd)
• pyproject: add docformatter settings (23b715b)
• pyproject: disable pytest warnings (d4d0ad8)
• pyproject: point main script to workflows cli (e35aa87)
• pyproject: set default pytest logging to INFO (4522430)
• test_utils: remove gillespie from random seed diff (df76a7f)
• tests: make doctests run on cpu (f4543c5)
• tests: reenable bazel xdoctests (29c2371)
• tests: reenable top-level imports (2ea0032)
• trainer: use inherited methods from VelocityModule (178abfe)
• utils: remove externalized VelocityModule method (72747fc)
• velocity_model: enable type-checking of get_rna (4ffdfb9)
• velocity_model: set create plates log to debug (6259e7a)
• velocity_model: set log name from module (7da7879)
• velocity_module: implement required inherited methods (885a841)
• velocity: use configure_logging (3477268)
• velocity: use VelocityModule method instead of utils (8a4afbd)
• vscode: add cspell dictionary (4e5c7ae)
• vscode: disable search.followSymlinks (7647f76)
• vscode: disable autohide sidebar (e89f240)
• vscode: disable cli debug launch arguments (3b53b51)
• vscode: exclude search/watch hypothesis cache (60bf2ba)
• vscode: update extensions (fc89dab)
• vscode: update settings (687f2bb)
• workflows: set workflow version to library version (f094130)