Add Continuous integration and start lesson plan #13
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| name: Check bash style | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: "0 0 16 * *" | |
| jobs: | |
| check_bash_style: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Set up Git repository | |
| uses: actions/checkout@v2 | |
| - name: Clone needed repos | |
| run: | | |
| cd .. | |
| git clone https://github.com/richelbilderbeek/launch_nft_locally_in_singularity_from_dockerfile | |
| git clone https://github.com/richelbilderbeek/nextflow_troubleshooting | |
| cd - | |
| - name: Check bash scripts for style | |
| run: shellcheck --external-sources *.sh |