Doc enhanced with resource profile and debugging instruction

v0.1.6

adjust FA stats file path for outlier analysis

Integrate html report generation with main process

• Integrate writeHtml.py with tbss_all
• calculate meanFAmask in FSL way
• merge 4D data according to sequence provided in caselist

Handle caseids occurring as substring among each other

• handle caseid duplication as a sub-string
• fill holes inside the brain region
• modify tests and reference results to account for hole filling
• remove redundant registration files
• use --space as the reference for registering FA to space

Addendum to v0.1.2

1. FIX: duplicate copy error
2. ENH: take absolute path for everything

individual FA based skeleton projection

1. Provide example commands
2. Use individual FA for all branches instead of mean FA during skeleton projection

config file omission, multi-platform testing

1. config file is omitted, arguments are passed directly from function to function
2. sort images after loading, fixed WIN and MAC test failurs
3. tbss_skeleton is equipped with -s flag, fixes #12
4. provided templates are copied to stats directory, originally it was @oferpasternak's suggestion, also requested by #11.

v0.1.0: Merge pull request #2 from pnlbwh/track-args

production-ready

Initial release

v0.0.1

TOC corrected