Lazy snapshot before changing laptops.

.bash_profile

@@ -13,5 +13,17 @@ export PATH=/opt/local/bin:/opt/local/sbin:$PATH
 
 # Setting PATH for Python 2.7
 # The orginal version is saved in .bash_profile.pysave
-PATH="/Library/Frameworks/Python.framework/Versions/2.7/bin:${PATH}"
+PATH="/usr/local/bin:/Library/Frameworks/Python.framework/Versions/2.7/bin:${PATH}"
 export PATH
+
+##
+# Your previous /Users/patokeefe/.bash_profile file was backed up as /Users/patokeefe/.bash_profile.macports-saved_2012-06-04_at_20:51:25
+##
+
+# MacPorts Installer addition on 2012-06-04_at_20:51:25: adding an appropriate PATH variable for use with MacPorts.
+export PATH=/opt/local/bin:/opt/local/sbin:$PATH
+# Finished adapting your PATH environment variable for use with MacPorts.
+
+
+export PATH=/Users/patokeefe/OpenSource/OpenNI-Bin-Dev-MacOSX-v1.5.4.0/Samples/Bin/x64-Release:$PATH
+

.bashrc

@@ -8,6 +8,7 @@ alias ipq="ipython qtconsole --pylab"
 export PYTHONPATH=/usr/local/lib/python:$PYTHONPATH
 export PYTHONPATH=/Library/Python/2.7/site-packages:$PYTHONPATH
 export PYTHONPATH=/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages:$PYTHONPATH
+export PYTHONPATH=/usr/local/lib/python2.7/site-packages:$PYTHONPATH
 # export PYTHONPATH=/Users/patokeefe/Projects/OpenSource/marlib:$PYTHONPATH
 # export PYTHONPATH=/Users/patokeefe/EsslResearch/CVTestSuite:$PYTHONPATH
 # export PYTHONPATH=/Users/patokeefe/EsslResearch/CVTestSuite/Utils:$PYTHONPATH
@@ -26,6 +27,8 @@ alias pu="pushd"
 alias d="dirs -v"
 alias l="less "
 
+alias multiepstopdf="find . -name \"*.eps\" -exec epstopdf {} \\;"
+
 alias g="grep --color='auto' -n"
 alias ls='ls -G'
 
@@ -67,9 +70,9 @@ export SVN_EDITOR=e
 export PKG_CONFIG_PATH="/usr/local/lib/pkgconfig"
 
 
-export CLASSPATH=/Users/patokeefe/Projects/Graduate/568-ps1-ps2/java/lcm.jar
-export CLASSPATH=/Users/patokeefe/Projects/Graduate/568-ps1-ps2/java/april.jar:$CLASSPATH
-export DYLD_LIBRARY_PATH=/Users/patokeefe/Projects/Graduate/568-ps1-ps2/lib
+export CLASSPATH=/Users/patokeefe/Projects/Archived/Graduate/568-ps1-ps2/java/lcm.jar
+export CLASSPATH=/Users/patokeefe/Projects/Archived/Graduate/568-ps1-ps2/java/april.jar:$CLASSPATH
+export DYLD_LIBRARY_PATH=/Users/patokeefe/Projects/Archived/Graduate/568-ps1-ps2/lib
 
 # export CLASSPATH=$CLASSPATH:/usr/share/java/jogl.jar:/usr/share/java/gluegen-rt.jar:/usr/local/share/java/lcm.jar:$HOME/april/java/april.jar:./
 # export CLASSPATH=/Users/patokeefe/Projects/OpenSource/april/java/april.jar:/usr/local/share/java/lcm.jar:./
@@ -78,5 +81,7 @@ alias java='java -ea -server'
 
 # export CLASSPATH=/Users/patokeefe/Downloads/eecs568/java/april.jar
 # export CLASSPATH=/Users/patokeefe/Downloads/eecs568/java/lcm.jar:$CLASSPATH
-export DYLD_LIBRARY_PATH=/Users/patokeefe/Projects/Archived/Graduate/568-ps1-ps2/java/jni:$DYLD_LIBRARY_PATH
+# export DYLD_LIBRARY_PATH=/Users/patokeefe/Projects/Archived/Graduate/568-ps1-ps2/java/jni:$DYLD_LIBRARY_PATH
 # export DYLD_LIBRARY_PATH=/Users/patokeefe/Downloads/eecs568/java/jni:$DYLD_LIBRARY_PATH
+
+export OPENCV_TEST_DATA_PATH='/Users/patokeefe/OpenSource/ecto_opencv/src/rgbd/testdata'

.gitconfig

@@ -1,7 +1,5 @@
 [user]
-	name = Pat O'Keefe
+	name = Patrick O'Keefe
 	email = [email protected]
 [core]
-	autocrlf = input
-	safecrlf = true
 	excludesfile = /Users/patokeefe/.gitignore_global

.gitignore_global

@@ -52,4 +52,15 @@ xcuserdata/
 *.#*
 */submission/auto/
 *_flymake*
-*synctex*
+*synctex*
+
+
+*/build/
+*.eps
+*.png
+*.jpg
+*.mat
+*.txt
+*.MOV
+*.fig
+*.bin

emacs-settings/.emacs.d/custom.el

@@ -6,15 +6,20 @@
  '(TeX-PDF-mode t)
  '(TeX-view-program-list (quote (("open" ""))) t)
  '(TeX-view-program-selection (quote (((output-dvi style-pstricks) "dvips and gv") (output-dvi "xdvi") (output-pdf "Evince") (output-html "xdg-open"))) t)
- '(c-basic-offset 4)
+ '(c-basic-offset 4 t)
  '(cc-other-file-alist (quote (("\\.cc\\'" (".hh" ".h")) ("\\.hh\\'" (".cc" ".C")) ("\\.m\\'" (".h")) ("\\.c\\'" (".h")) ("\\.h\\'" (".c" ".cc" ".C" ".CC" ".cxx" ".cpp" ".m")) ("\\.C\\'" (".H" ".hh" ".h")) ("\\.H\\'" (".C" ".CC")) ("\\.CC\\'" (".HH" ".H" ".hh" ".h")) ("\\.HH\\'" (".CC")) ("\\.c\\+\\+\\'" (".h++" ".hh" ".h")) ("\\.h\\+\\+\\'" (".c++")) ("\\.cpp\\'" (".hpp" ".hh" ".h")) ("\\.hpp\\'" (".cpp")) ("\\.cxx\\'" (".hxx" ".hh" ".h")) ("\\.hxx\\'" (".cxx")))))
  '(cua-enable-cua-keys nil)
  '(flyspell-issue-message-flag nil)
  '(flyspell-issue-welcome-flag nil)
  '(fringe-mode 0 nil (fringe))
+ '(grep-command "grep -nHi -e ")
+ '(grep-find-command (quote ("find . -type f -exec grep -nHi -e  {} +" . 34)))
+ '(grep-highlight-matches (quote auto))
  '(ido-enable-tramp-completion nil)
  '(ido-ignore-directories (quote ("\\`CVS/" "\\`\\.\\./" "\\`\\./" "\\`auto/" "\\\\.prv/")))
  '(ido-ignore-files (quote ("\\`CVS/" "\\`#" "\\`.#" "\\`\\.\\./" "\\`\\./" "_region_" "\\\\.prv/" "\\`auto/" "\\.DS_Store" "_flymake\\." "\\.pyg" "\\.synctex\\.gz")))
+ '(matlab-auto-fill nil)
+ '(matlab-fill-code nil)
  '(matlab-use-eei nil)
  '(org-agenda-files (quote ("~/Dropbox/Org/gtd.org" "~/Dropbox/Org/inbox.org")))
  '(org-capture-templates (quote (("t" "Todo" entry (file+headline "~/Dropbox/Org/inbox.org" "Inbox") "* TODO %?
@@ -27,7 +32,7 @@
     Added: %U"))))
  '(org-hide-leading-stars t)
  '(org-odd-levels-only t)
- '(org-refile-targets (quote (("~/Dropbox/Org/gtd.org" :maxlevel . 2))))
+ '(org-refile-targets (quote (("~/Google Drive/Org/gtd.org" :maxlevel . 2) ("~/Google Drive/Org/occipital.org" :maxlevel . 2))))
  '(org-startup-folded t)
  '(preview-auto-reveal t)
  '(preview-gs-command "/usr/local/bin/gs")

emacs-settings/.emacs.d/init.el

@@ -57,9 +57,13 @@ ELPA (or Marmalade).")
 (set-frame-size-according-to-resolution)
 
 (open-filelist '("~/.emacs.d/init.el"
-                 "~/Google Drive/Org/gtd.org"))
+                 "~/Google Drive/Org/gtd.org"
+                 "~/Google Drive/Org/occipital.org"))
 
 (switch-to-buffer "gtd.org")
+(split-window-below)
+(other-window 1)
+(switch-to-buffer "occipital.org")
 
 ;; Benchmarking
 (message "My .emacs loaded in %ds"

emacs-settings/.emacs.d/modules/init-editing.el

@@ -13,6 +13,8 @@
 (setq-default tab-width 8)            ;; but maintain correct appearance
 (setq-default tab-width 4)
 (setq indent-line-function 'insert-tab)
+(setq c-default-style "linux"
+      c-basic-offset 4)
 
 ;; delete the selection with a keypress
 (delete-selection-mode t)

emacs-settings/.emacs.d/modules/init-org.el

@@ -110,6 +110,12 @@
   )
 (global-set-key (kbd "C-c g") 'gtd)
 
+(defun occipitalGtd ()
+  (interactive)
+  (find-file (concat org-directory "/occipital.org"))
+  )
+(global-set-key (kbd "C-c o") 'occipitalGtd)
+
 (defun inbox()
   (interactive)
   (find-file (concat org-directory "/inbox.org"))

emacs-settings/.emacs.d/modules/init-packages.el

@@ -23,6 +23,7 @@
                       volatile-highlights
                       zenburn-theme
                       color-theme
+                      cmake-mode
                       yasnippet)
   "A list of packages that will be installed at launch (if missing).")
 

emacs-settings/.emacs.d/modules/init-programming.el

@@ -4,6 +4,7 @@
 
 (require 'imenu)
 
+
 (defun ido-goto-symbol (&optional symbol-list)
   "Refresh imenu and jump to a place in the buffer using Ido."
   (interactive)
@@ -57,6 +58,7 @@
 (require 'which-func)
 (which-func-mode 1)
 
+(require 'cmake-mode)
 
 ;; ;; We have a number of turn-on-* functions since it's advised that lambda
 ;; ;; functions not go in hooks. Repeatedly evaluating an add-to-list with a
@@ -101,7 +103,7 @@
 
 (defun prog-mode-defaults ()
   "Default coding hook, useful with any programming language."
-  (flyspell-prog-mode)
+  ;; (flyspell-prog-mode)
   (turn-on-local-comment-auto-fill)
   (turn-on-whitespace-mode)
   ;; (turn-on-hl-line-mode)

emacs-settings/.emacs.d/modules/init-ui.el

@@ -20,7 +20,19 @@
   (if (>= emacs-major-version 23)
       (set-frame-font "Menlo-12")))
 
+;; Also make function calls highlighted
+(font-lock-add-keywords 'c-mode
+  '(("\\s\"?\\(\\(\\sw\\|\\s_\\)+\\(<-\\)?\\)\\s\"?*\\s-*("
+    (1 font-lock-function-name-face)))  t)
 
+(font-lock-add-keywords 'c++-mode
+  '(("\\s\"?\\(\\(\\sw\\|\\s_\\)+\\(<-\\)?\\)\\s\"?*\\s-*("
+    (1 font-lock-function-name-face)))  t)
+
+;; And for python-mode too...
+(font-lock-add-keywords 'python-mode
+  '(("\\s\"?\\(\\(\\sw\\|\\s_\\)+\\(<-\\)?\\)\\s\"?*\\s-*("
+    (1 font-lock-function-name-face)))  t)
 
 ;; the menu bar is mostly useless as well
 ;; but removing it under OS X doesn't make much sense
@@ -97,7 +109,9 @@
 
 ;; Or this modified tango tango theme
 (require 'color-theme)
+(load-file "~/.emacs.d/themes/color-theme-tomorrow.el")
 (load-file "~/.emacs.d/themes/naquadah-theme.el")
+(color-theme-tomorrow-night)
 
 ;; (load-theme 'tango-2 t)
 

emacs-settings/.emacs.d/snippets/text-mode/cc-mode/banner

@@ -0,0 +1,8 @@
+#contributor : Pat O'Keefe
+#name : Comment Banner
+# --
+//${1:$(make-string (+ (string-width text) 1) ?-)}
+// ${1:Comment}
+//${1:$(make-string (+ (string-width text) 1) ?-)}
+
+$0

emacs-settings/.emacs.d/snippets/text-mode/matlab-mode/banner

@@ -0,0 +1,8 @@
+#contributor : Pat O'Keefe
+#name : Comment Banner
+# --
+%${1:$(make-string (+ (string-width text) 1) ?=)}
+% ${1:Comment}
+%${1:$(make-string (+ (string-width text) 1) ?=)}
+
+$0

emacs-settings/.emacs.d/snippets/text-mode/matlab-mode/func

@@ -0,0 +1,8 @@
+#contributor : Pat O'Keefe  <[email protected]>
+#name : Function declaration
+# --
+function $1 = ${2:functionName}(${3:functionArgs})
+% $2 -- ${4:Short description}
+%
+% $0
+%

emacs-settings/.emacs.d/themes/color-theme-blue-theme.el

@@ -0,0 +1,91 @@
+;;; tomorrow-night-blue-theme.el --- custom theme for faces
+
+;;; Commentary:
+;;
+;;; Tomorrow Night Blue Theme
+;;
+;; Originally by Chris Kempson https://github.com/ChrisKempson/Tomorrow-Theme
+;; Ported to GNU Emacs by Chris Charles
+;; Ported to GNU Emacs 24's built-in theme system by Jim Myhrberg (@jimeh)
+
+;;; Code:
+
+(deftheme tomorrow-night-blue
+  "A Pastel Coloured Theme")
+
+(let ((background "#002451")
+      (current-line "#00346e")
+      (selection "#003f8e")
+      (foreground "#ffffff")
+      (comment "#7285b7")
+      (cursor "#ffffff")
+      (red "#ff9da4")
+      (orange "#ffc58f")
+      (yellow "#ffeead")
+      (green "#d1f1a9")
+      (aqua "#99ffff")
+      (blue "#bbdaff")
+      (purple "#ebbbff"))
+
+  (custom-theme-set-faces
+   'tomorrow-night-blue
+
+   ;; Built-in stuff (Emacs 23)
+   `(default ((t (:background ,background :foreground ,foreground))))
+   `(fringe ((t (:background ,current-line))))
+   `(minibuffer-prompt ((t (:foreground ,blue))))
+   `(mode-line ((t (:background ,current-line :foreground ,foreground))))
+   `(region ((t (:background ,selection))))
+
+   ;; Font-lock stuff
+   `(font-lock-comment-face ((t (:foreground ,comment))))
+   `(font-lock-constant-face ((t (:foreground ,green))))
+   `(font-lock-doc-string-face ((t (:foreground ,comment))))
+   `(font-lock-function-name-face ((t (:foreground ,blue))))
+   `(font-lock-keyword-face ((t (:foreground ,purple))))
+   `(font-lock-string-face ((t (:foreground ,green))))
+   `(font-lock-type-face ((t (:foreground ,yellow))))
+   `(font-lock-variable-name-face ((t (:foreground ,red))))
+   `(font-lock-warning-face ((t (:foreground ,red))))
+
+   ;; hl-line-mode
+   `(hl-line ((t (:background ,current-line))))
+
+   ;; linum-mode
+   `(linum ((t (:background ,current-line :foreground ,foreground))))
+
+   ;; org-mode
+   `(org-date ((t (:foreground ,purple))))
+   `(org-done ((t (:foreground ,green))))
+   `(org-hide ((t (:foreground ,current-line))))
+   `(org-link ((t (:foreground ,blue))))
+   `(org-todo ((t (:foreground ,red))))
+
+   ;; show-paren-mode
+   `(show-paren-match ((t (:background ,blue :foreground ,current-line))))
+   `(show-paren-mismatch ((t (:background ,orange :foreground ,current-line))))
+
+   ;; rainbow-delimiters
+   `(rainbow-delimiters-depth-1-face ((t (:foreground ,purple))))
+   `(rainbow-delimiters-depth-2-face ((t (:foreground ,blue))))
+   `(rainbow-delimiters-depth-3-face ((t (:foreground ,aqua))))
+   `(rainbow-delimiters-depth-4-face ((t (:foreground ,green))))
+   `(rainbow-delimiters-depth-5-face ((t (:foreground ,yellow))))
+   `(rainbow-delimiters-depth-6-face ((t (:foreground ,orange))))
+   `(rainbow-delimiters-depth-7-face ((t (:foreground ,red))))
+   `(rainbow-delimiters-depth-8-face ((t (:foreground ,comment))))
+   `(rainbow-delimiters-depth-9-face ((t (:foreground ,foreground)))))
+
+  (custom-theme-set-variables
+   'tomorrow-night-blue
+
+   `(ansi-color-names-vector
+     ;; black, red, green, yellow, blue, magenta, cyan, white
+     [,background ,red ,green ,yellow ,blue ,purple ,blue ,foreground])
+   `(ansi-term-color-vector
+     ;; black, red, green, yellow, blue, magenta, cyan, white
+     [unspecified ,background ,red ,green ,yellow ,blue ,purple ,blue ,foreground])))
+
+(provide-theme 'tomorrow-night-blue)
+
+;;; tomorrow-night-blue-theme.el ends here