updated videos to phenotype videos

pombase · Aug 30, 2023 · 1f5a30a · 1f5a30a
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diff --git a/docs/genes_alleles_genotypes.md b/docs/genes_alleles_genotypes.md
@@ -6,7 +6,7 @@ hide:
 
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-    <iframe src="https://www.youtube.com/embed/-cj_PdJi68A" frameborder="0" allowfullscreen></iframe>
+    <iframe src="https://www.youtube.com/embed/KY7ev8IEG00" frameborder="0" allowfullscreen></iframe>
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 ## Adding genes to a session

diff --git a/docs/genetic_interaction.md b/docs/genetic_interaction.md
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-    <iframe src="https://www.youtube.com/embed/-cj_PdJi68A" frameborder="0" allowfullscreen></iframe>
+    <iframe src="https://www.youtube.com/embed/KY7ev8IEG00" frameborder="0" allowfullscreen></iframe>
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diff --git a/docs/go_BP.md b/docs/go_BP.md
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-    <iframe src="https://www.youtube.com/embed/-cj_PdJi68A" frameborder="0" allowfullscreen></iframe>
+    <iframe src="https://www.youtube.com/embed/KY7ev8IEG00" frameborder="0" allowfullscreen></iframe>
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diff --git a/docs/go_CC.md b/docs/go_CC.md
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+    <iframe src="https://www.youtube.com/embed/KY7ev8IEG00" frameborder="0" allowfullscreen></iframe>
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diff --git a/docs/go_MF.md b/docs/go_MF.md
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-    <iframe src="https://www.youtube.com/embed/-cj_PdJi68A" frameborder="0" allowfullscreen></iframe>
+    <iframe src="https://www.youtube.com/embed/KY7ev8IEG00" frameborder="0" allowfullscreen></iframe>
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diff --git a/docs/phenotypes.md b/docs/phenotypes.md
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-    <iframe src="https://www.youtube.com/embed/-cj_PdJi68A" frameborder="0" allowfullscreen></iframe>
+    <iframe src="https://www.youtube.com/embed/KY7ev8IEG00" frameborder="0" allowfullscreen></iframe>
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 ## Making an annotation
 
-On the `Quick Links` list, click on `Phenotype`, it should open a window that requires you to indicate:
-
-  * **Genotype:** you can choose from the previously created genotypes (see [how to add genotypes](./genes_alleles_genotypes.md)). You can click on the magnifying glass on the right to use a search box instead of a drop-down menu.
+On the `Quick Links` list, click on `Phenotype` to open a window that requires you to indicate:
+****
+  * **Genotype:** you can choose from the genotypes added to the session from a dropdown (see [how to add genotypes](./genes_alleles_genotypes.md)). Click on the magnifying glass on the right to use a search box instead of a drop-down menu.
   * **Term name:** a FYPO term describing the phenotype associated with the genotype you selected above.
-      * Start typing a phenotype in the search box. If you do not find what you are looking for, choose a broad term (e.g. abnormal spindle).
-      * Click the chosen term, and verify that the displayed definition describes the phenotype you want to annotate. There might be a "Comment" section with extra tips for annotation.
+      * Start typing a phenotype in the search box. If you do not find the precise phenotype you are looking for, choose a broad term (e.g. abnormal spindle) that can be refined later.
+      * Click the chosen term, and verify that the displayed definition describes the phenotype you want to annotate. There is sometimes a "Comment" section with extra tips for annotation.
       * If the blue button reads `Next`, click it and see if you can find a more specific term that the one you originally selected. If so, select it and do as before.
       * Otherwise, click `Finish`.
+      * If you do not find the term you require, select a broader term, and request a new one clicking on `Suggest a new term` on the right side of the text box.
   * **Annotation extension:** this field appears once you have selected a term describing the phenotype, always click the `Add` button to see if you canspecify:
       * **Penetrance:** proportion of cells in the population that show the phenotype, can be a qualitative value or a percentage.
       * **Severity:** qualitative value to capture the strength of the phenotype. This is specially useful when several mutants show the same phenotype with different strength (e.g. cells being elongated).
@@ -37,4 +38,5 @@ On the `Quick Links` list, click on `Phenotype`, it should open a window that re
               * **Sequence ontology term:** to indicate that the phenotype affects a type of sequence (e.g. `centromeric repeat`).
 
   * **Evidence code:** the type of experiment where the phenotype was observed.
-  * **Conditions:**  Type and select from the autocomplete options. Several conditions can be added, and capture the medium or temperature used, presence of chemicals, agar plates or liquid culture, etc.
+  * **Conditions:** Conditions are aspects of the experimental setup that are **independent of what cells, strain, organism, etc. are used**. Type and select from the autocomplete options. Several conditions can be added, and capture the medium or temperature used, presence of chemicals, agar plates or liquid culture, etc.
+  * **Comment:** it's very useful for us if you indicate the figure or table where this phenotype comes from.
diff --git a/docs/physical_interaction.md b/docs/physical_interaction.md
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+    <iframe src="https://www.youtube.com/embed/KY7ev8IEG00" frameborder="0" allowfullscreen></iframe>
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diff --git a/docs/productivity.md b/docs/productivity.md
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diff --git a/docs/protein_modification.md b/docs/protein_modification.md
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diff --git a/docs/protein_sequence_feature.md b/docs/protein_sequence_feature.md
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diff --git a/docs/rna_protein_level.md b/docs/rna_protein_level.md
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-    <iframe src="https://www.youtube.com/embed/-cj_PdJi68A" frameborder="0" allowfullscreen></iframe>
+    <iframe src="https://www.youtube.com/embed/KY7ev8IEG00" frameborder="0" allowfullscreen></iframe>
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