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closes #4602; closes #4602; closes #4600 (#4603)
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@ValWood
ValWood authored Sep 2, 2024
1 parent 405221e commit 560b4af
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46 changes: 45 additions & 1 deletion src/ontology/fypo-edit.owl
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Expand Up @@ -8761,6 +8761,10 @@ Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008283>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008284>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008285>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008286>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008287>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008288>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008289>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0008290>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009000>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009001>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009002>))
Expand Down Expand Up @@ -65402,7 +65406,6 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasExa
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0003664> "fission_yeast_phenotype")
AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0003664> "FYPO:0003664")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0003664> "abolished RNA pyrophosphohydrolase activity")
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0003664> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001558> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0034353>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0003664> <http://purl.obolibrary.org/obo/FYPO_0000664>)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0003664> <http://purl.obolibrary.org/obo/FYPO_0003663>)

Expand Down Expand Up @@ -132446,6 +132449,47 @@ AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYP
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008286> "normal cellular 1-IP7 level"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008286> <http://purl.obolibrary.org/obo/FYPO_0008284>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008287> (sensitive to 1-chloro-2,4-dinitrobenzene)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:pc") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008287> "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to 1-chloro-2,4-dinitrobenzene (CDNB). Cells stop growing (and may die) at a concentration of 1-chloro-2,4-dinitrobenzene that allows wild type cells to grow.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008287> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008287> "2024-09-02T10:33:42Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008287> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008287> "sensitive to 1-chloro-2,4-dinitrobenzene"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008287> <http://purl.obolibrary.org/obo/FYPO_0000127>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008288> (increased cellular ceramide level)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:pc") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008288> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a ceramide measured in a cell higher than normal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008288> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008288> "2024-09-02T10:41:06Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008288> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008288> "increased cellular ceramide level"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0008288> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001162> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/CL_0000521>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002503> <http://purl.obolibrary.org/obo/CHEBI_17761>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008288> <http://purl.obolibrary.org/obo/FYPO_0001330>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008289> (abnormal guanyl-nucleotide exchange factor activity)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:vw") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008289> "A molecular function phenotype in which a guanyl-nucleotide exchange factor activity is abnormal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008289> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008289> "2024-09-02T10:48:48Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0008289> "abnormal GEF activity")
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008289> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008289> "abnormal guanyl-nucleotide exchange factor activity"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0008289> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0005085>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008289> <http://purl.obolibrary.org/obo/FYPO_0000661>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008290> (abolished guanyl-nucleotide exchange factor activity)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:vw") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008290> "A molecular function phenotype in which a guanyl-nucleotide exchange factor activity is absent.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008290> "vw")
AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0008290> "2024-09-02T10:51:58Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0008290> "abolished GEF activity")
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008290> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008290> "abolished guanyl-nucleotide exchange factor activity"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0008290> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001558> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0005085>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008290> <http://purl.obolibrary.org/obo/FYPO_0008289>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0009000> (decreased rate of cytoplasmic microtubule polymerization during mitotic interphase)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36633091") Annotation(oboInOwl:hasDbXref "PomBase:mlr") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0009000> "A microtubule cytoskeleton organization phenotype observed during mitotic interphase in which cytoplasmic microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a lower rate, or speed, than normal.")
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3 changes: 3 additions & 0 deletions src/ontology/imports/chebi_terms.txt
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Original file line number Diff line number Diff line change
@@ -1,3 +1,6 @@
CHEBI:34718
CHEBI:24479
CHEBI:24480
CHEBI:82625
CHEBI:23774
CHEBI:41033
Expand Down

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