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Select PomBase gene conf from db-xrefs.yaml
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kimrutherford committed Nov 12, 2024
1 parent e82248d commit 3fbbc69
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion etc/update_generated_files.sh
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ database_name=$(jq '."database_name"' $web_config | perl -pne 's/"(.+?)"/$1/g')
echo Generating documentation for: $database_name
echo

ABBREVS="PomBase ENA AGI_LocusCode HGNC CDD DDJB DOI PUBMED PMID ISBN EC EMBL ENSEMBL:gene FB:gene GEO GO:molecular_function HAMAP InterPro iPTMnet TIGRFAMS MGI:gene ModBase PANTHER PDB PIRSF PR PRINTS PRODOM Pfam:polypeptide_region ProDom Prosite QuickGO RGD SFLD SGD SMART SO:sequence_feature SUPERFAMILY UniPathway UniProtKB UniProtKB-KW UniProtKB-SubCell WB:gene dictyBase Cyclebase ZFIN:gene CGD TAIR:gene AlphaFold JaponicusDB RHEA CHEBI CL ComplexPortal"
ABBREVS="PomBase:gene ENA AGI_LocusCode HGNC CDD DDJB DOI PUBMED PMID ISBN EC EMBL ENSEMBL:gene FB:gene GEO GO:molecular_function HAMAP InterPro iPTMnet TIGRFAMS MGI:gene ModBase PANTHER PDB PIRSF PR PRINTS PRODOM Pfam:polypeptide_region ProDom Prosite QuickGO RGD SFLD SGD SMART SO:sequence_feature SUPERFAMILY UniPathway UniProtKB UniProtKB-KW UniProtKB-SubCell WB:gene dictyBase Cyclebase ZFIN:gene CGD TAIR:gene AlphaFold JaponicusDB RHEA CHEBI CL ComplexPortal"

DB_XREFS_FILE=/tmp/db-xrefs-$$.yaml

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