Skip to content

Scripts used for ABC analysis with homo- and heterogeneity in Migration rates or/and Effective population sizes

Notifications You must be signed in to change notification settings

popgenomics/popPhylABC

Repository files navigation

Datasets from the popPhyl project:
https://lc.cx/4Eid

Converting fasta files into input for ABC analysis:
popPhyl2ABC_v2.py

This code depends on the C++ library libsequence by calling polydNdS to get synonymous positions.
An incompatibility had been reported with version of libsequence >2.0 !!!
https://github.com/molpopgen/analysis


To compile mscalc, the calculator of statistics:
gcc *.c -lm -o mscalc

To compile msnsam, the coalescent simulator (Ross-Ibarra et al, 2008):
./clms

The following programs have to be linked to your bin/ :
	mscalc
	priorgen.py
	msnsam
	popPhyl2ABC_v2.py
	polydNdS

About

Scripts used for ABC analysis with homo- and heterogeneity in Migration rates or/and Effective population sizes

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published