major updates to figure styles after Ilan review

popsim-consortium · Feb 18, 2025 · 710ce7c · 710ce7c
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diff --git a/DFE_figures.ipynb b/DFE_figures.ipynb
diff --git a/notebooks/DFE_figures.ipynb b/notebooks/DFE_figures.ipynb
diff --git a/notebooks/HomSap_Constant_Gamma_K17_all_sites_DFE_plot.pdf b/notebooks/HomSap_Constant_Gamma_K17_all_sites_DFE_plot.pdf
diff --git a/notebooks/HomSap_Constant_Gamma_K17_ensembl_havana_104_exons_DFE_plot.pdf b/notebooks/HomSap_Constant_Gamma_K17_ensembl_havana_104_exons_DFE_plot.pdf
diff --git a/notebooks/HomSap_OutOfAfricaArchaicAdmixture_5R19_Gamma_K17_all_sites_DFE_plot.pdf b/notebooks/HomSap_OutOfAfricaArchaicAdmixture_5R19_Gamma_K17_all_sites_DFE_plot.pdf
diff --git a/...s/HomSap_OutOfAfricaArchaicAdmixture_5R19_Gamma_K17_ensembl_havana_104_exons_DFE_plot.pdf b/...s/HomSap_OutOfAfricaArchaicAdmixture_5R19_Gamma_K17_ensembl_havana_104_exons_DFE_plot.pdf
diff --git a/notebooks/HomSap_discrete_DFE.pdf b/notebooks/HomSap_discrete_DFE.pdf
diff --git a/notebooks/PhoSin_Constant_Gamma_R22_Phocoena_sinus.mPhoSin1.pri.110_exons_DFE_plot.pdf b/notebooks/PhoSin_Constant_Gamma_R22_Phocoena_sinus.mPhoSin1.pri.110_exons_DFE_plot.pdf
diff --git a/notebooks/PhoSin_Constant_Gamma_R22_all_sites_DFE_plot.pdf b/notebooks/PhoSin_Constant_Gamma_R22_all_sites_DFE_plot.pdf
diff --git a/...ks/PhoSin_Vaquita2Epoch_1R22_Gamma_R22_Phocoena_sinus.mPhoSin1.pri.110_exons_DFE_plot.pdf b/...ks/PhoSin_Vaquita2Epoch_1R22_Gamma_R22_Phocoena_sinus.mPhoSin1.pri.110_exons_DFE_plot.pdf
diff --git a/notebooks/PhoSin_Vaquita2Epoch_1R22_Gamma_R22_all_sites_DFE_plot.pdf b/notebooks/PhoSin_Vaquita2Epoch_1R22_Gamma_R22_all_sites_DFE_plot.pdf
diff --git a/notebooks/estimated_Ne_t_final.pdf b/notebooks/estimated_Ne_t_final.pdf
diff --git a/notebooks/vaquita_estimated_Ne_t_final.pdf b/notebooks/vaquita_estimated_Ne_t_final.pdf