This repository contains some codes used in the article that will be published later.
This code uses the following approach:
The project was created and designed under "jupyter researchers" approach. Doing so, you'll need an jupyter interface to open it.
-
Install pip (only if you're running on linux):
sudo apt install python3-pip
- Install all dependencies
cd src
# if you have the python2 installed too
pip3 install -r requirements.txt
# or
pip install -r requirements.txt
# uninstall
pip3 uninstall -r requirements.txt
- You can install the graphviz by the package site or typing:
-
in debian-based linux:
sudo apt install graphviz
-
or using a choco (windows)
choco install graphviz
-
- You also need to install the plotly support for jupyter:
# basic packages
pip install plotly==4.14.3
pip install "notebook>=5.3" "ipywidgets>=7.5"
pip install jupyterlab "ipywidgets>=7.5"
# The following commands needs node to be installed:
# JupyterLab renderer support
jupyter labextension install [email protected]
# OPTIONAL: Jupyter widgets extension
jupyter labextension install @jupyter-widgets/jupyterlab-manager [email protected]
- Optionally, you can create an venv (virtual env):
# install venv
sudo apt install python3-venv
# create a new venv
python3 -m venv pyenv
# Activate the virtual environment
source pyenv/bin/activate
# To deactivate the venv
deactivate
- You can install jupyter using:
pip3 install jupyterlab
After that, opens the
./src/main.ipynb
file and run it.
The documentation of modules
is inside src/doc/build/html
folder.
The project was developed using Google Docstrings and RST (Reestructured text) guides. You can check here and here.
- furo (black)
- read the docs (default)
- asteroid
-
You can test the python codes using the script "tests.py":
# run all the tests python src/tests.py
-
You also can use the "vscode testing tool":
Press: CTRL+SHIFT+P or F1 and then, type: Tests:
# autodocumentation sphinx api (inside source folder)
sphinx-apidoc -o . ../../modules/
# generate html pages for sphinx
make html
# create a new documentation
sphinx-quickstart
# dump mongo
$ mongodump --port 27017 -u USER_NICK -p USER_PASSWORD -d DATABASE --authenticationDatabase admin -o OUTPUT_FOLDER
# restore mongo
$ mongorestore --port 27017 -u USER_NICK -p USER_PASSWORD OUTPUT_FOLDER/
# online restore
mongorestore --uri URI_CONNECTION_STRING OUTPUT_FOLDER/
To install other themes you must search for a python package equivalent for that theme.