Code

SignInt & FTP fix#1989

Code

Merged

karolamik13 merged 34 commits intoprody:mainprody/ProDy:mainfrom karolamik13:prody-signintkarolamik13/ProDy:prody-signintCopy head branch name to clipboardDec 2, 2024

+995-30

Commits

Commits on Nov 9, 2024

• wrapper4insty is added as calcSignatureInteractions()

  karolamik13

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  b72cd81

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• fstrings removed

  karolamik13

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  4505312

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• replacing additional fstrings

  karolamik13

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  b8cdafc

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• extractMultiModelPDB

  karolamik13

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  6345be8

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Commits on Nov 10, 2024

• fstrings replaced

  karolamik13

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  f088e5a

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• Merge branch 'prody-signint' of github.com:karolamik13/ProDy into prody-signint

  karolamik13

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  92e6c88

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• fixer import

  karolamik13

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  0b8da0f

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• Merge remote-tracking branch 'jamesmkrieger/pdb_ftp' into prody-signint

  karolamik13

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  81f1e0c

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• extractMultiModelPDB improvements

  karolamik13

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  1260011

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• createFoldseekAlignment

  karolamik13

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  f2956d9

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• fix in kwargs, createFoldseekAlignment

  karolamik13

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  ca71719

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• LOGGER info added to SignInt functions

  karolamik13

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  f736b8a

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• runFoldseek is added

  karolamik13

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  0112652

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Commits on Nov 11, 2024

• LOGGER changes

  karolamik13

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  f0565f2

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• cov-mode parameter to foldseek run

  karolamik13

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  ba342f9

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• runFoldseek improvements with kwargs, docs

  karolamik13

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  05b4621

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• changes in imports

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  d31d183

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Commits on Nov 12, 2024

• kwargs for plot_barh

  karolamik13

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  9b79bd7

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• fixing typos

  karolamik13

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  6e342c4

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• kwargs for calcSignatureInteractions, optional removal of tmp files

  karolamik13

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  5450f8c

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Commits on Nov 13, 2024

• if for 'fixed_files' removed

  karolamik13

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  1ec47c5

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• 3to1 letter code is not replaced by AAMAP

  karolamik13

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  6d34878

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• Checks for database_folder exists

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  ee64b51

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• additional checks and docs improvements

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  8c19c0f

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Commits on Nov 16, 2024

• runDali added

  karolamik13

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  22ff338

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• Merge branch 'prody:main' into prody-signint

  karolamik13

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  3dab901

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• TypeError replaced by LOGGER.warn in runDali

  karolamik13

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  8a0019d

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Commits on Nov 19, 2024

• runBLAST form SignInter added

  karolamik13

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  f57418e

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Commits on Nov 22, 2024

• calcSignatureInteractions includes now analysis with MSA file [further reorganization needed]

  karolamik13

  committed
  50a37d6

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Commits on Nov 27, 2024

• reoeganization of runFoldseek and calcSignatureInteractions

  karolamik13

  committed
  566d340

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Commits on Nov 28, 2024

• docs fix [InSty]

  karolamik13

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  12841bb

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Commits on Dec 1, 2024

• final rearrangement of calcSignatureInteractions with MSA file

  karolamik13

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  c7d4a99

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• Changes in docs

  karolamik13

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  c159a34

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• Merge branch 'main' into prody-signint

  karolamik13

  authored
  4a3f244

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