disable numba jit for code run on jit for full coverage #2112
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| test: | |
| name: "Tests Core" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.9", "3.12"] | |
| pytest_opts: ["--workers 4 --tests-per-worker 1"] | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: x64 | |
| - uses: prefix-dev/[email protected] | |
| with: | |
| pixi-version: v0.41.4 | |
| cache: true | |
| - name: set numba parallel flags | |
| run: echo "NUMBA_NUM_THREADS=1" >> $GITHUB_ENV | |
| - name: Setup r2u | |
| uses: eddelbuettel/github-actions/r2u-setup@master | |
| - name: Print R version | |
| run: Rscript -e 'R.version' | |
| - name: Install R packages | |
| run: | | |
| R_LIB_PATH="${{ github.workspace }}/.pixi/envs/dev/lib/R/library" | |
| mkdir -p $R_LIB_PATH | |
| Rscript -e ".libPaths('$R_LIB_PATH'); install.packages(c('fixest', 'broom','did2s', 'wildrwolf', 'ivDiag', 'car'), lib='/home/runner/work/pyfixest/pyfixest/.pixi/envs/dev/lib/R/library')" | |
| Rscript -e ".libPaths('$R_LIB_PATH'); install.packages('ritest', lib='/home/runner/work/pyfixest/pyfixest/.pixi/envs/dev/lib/R/library', repos = c('https://grantmcdermott.r-universe.dev'))" | |
| - name: Run 'regular' tests | |
| run: | | |
| pixi run tests-regular | |
| - name: Upload coverage to Codecov (partial) | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| partial: true | |
| flags: core-tests | |
| files: coverage.xml | |
| test_slow: | |
| name: "Tests vs fixest" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.9", "3.12"] | |
| pytest_opts: ["--workers 4 --tests-per-worker 1"] | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: x64 | |
| - uses: prefix-dev/[email protected] | |
| with: | |
| pixi-version: v0.41.4 | |
| cache: true | |
| - name: set numba parallel flags | |
| run: echo "NUMBA_NUM_THREADS=1" >> $GITHUB_ENV | |
| - name: Setup r2u | |
| uses: eddelbuettel/github-actions/r2u-setup@master | |
| - name: Install R packages | |
| run: | | |
| R_LIB_PATH="${{ github.workspace }}/.pixi/envs/dev/lib/R/library" | |
| mkdir -p $R_LIB_PATH | |
| Rscript -e ".libPaths('$R_LIB_PATH'); install.packages(c('fixest', 'broom','did2s', 'wildrwolf', 'ivDiag', 'car'), lib='/home/runner/work/pyfixest/pyfixest/.pixi/envs/dev/lib/R/library')" | |
| Rscript -e ".libPaths('$R_LIB_PATH'); install.packages('ritest', lib='/home/runner/work/pyfixest/pyfixest/.pixi/envs/dev/lib/R/library', repos = c('https://grantmcdermott.r-universe.dev'))" | |
| - name: Run tests against r | |
| run: | | |
| pixi run tests-against-r | |
| - name: Upload coverage to Codecov (partial) | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| partial: true | |
| flags: tests-vs-r | |
| files: coverage.xml | |
| merge_coverage: | |
| name: "Merge Coverage" | |
| runs-on: ubuntu-latest | |
| needs: [test, test_slow] | |
| steps: | |
| - name: Final coverage merge | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| partial: false | |
| flags: final | |
| build-docs: | |
| name: "Build Docs" | |
| runs-on: ubuntu-latest | |
| needs: ["test"] | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - uses: prefix-dev/[email protected] | |
| with: | |
| pixi-version: v0.41.4 | |
| cache: true | |
| - name: Set up Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| - name: install tinytex | |
| run: | | |
| quarto install tinytex | |
| - name: Compile docstrings with quartodoc | |
| run: | | |
| pixi run docs-build | |
| - name: Render docs | |
| run: | | |
| pixi run docs-render | |
| - name: Save docs artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: docs-html | |
| path: docs/_site | |
| publish-docs: | |
| name: "Publish Docs" | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| needs: ["build-docs", "test"] | |
| if: github.ref == 'refs/heads/master' | |
| steps: | |
| - name: Download docs artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: docs-html | |
| path: docs/_site | |
| - name: Publish docs to GitHub Pages | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: docs/_site |