Skip to content

Commit

Permalink
doc updates [skip ci]
Browse files Browse the repository at this point in the history
  • Loading branch information
Circle Ci committed Jan 6, 2025
1 parent c36565b commit ea42866
Show file tree
Hide file tree
Showing 161 changed files with 854 additions and 854 deletions.
Binary file modified dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
View file
Binary file not shown.
Binary file modified dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip
View file
Binary file not shown.
Binary file modified dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip
View file
Binary file not shown.
Binary file modified dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip
View file
Binary file not shown.
Binary file modified dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip
View file
Binary file not shown.
Binary file modified dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip
View file
Binary file not shown.
Binary file modified dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
View file
Binary file not shown.
Binary file modified dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip
View file
Binary file not shown.
Binary file modified dev/_images/sphx_glr_plot_mixed_edge_graph_001.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file modified dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
2 changes: 1 addition & 1 deletion dev/_modules/index.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@
<link href="../_static/styles/theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
<link href="../_static/styles/pydata-sphinx-theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />

<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=a746c00c" />
<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=8f2a1f02" />
<link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
<link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=d2d258e8" />
<link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
Expand Down
22 changes: 11 additions & 11 deletions dev/_modules/pywhy_graphs/algorithms/cpdag.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@
<link href="../../../_static/styles/theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
<link href="../../../_static/styles/pydata-sphinx-theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />

<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=a746c00c" />
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=8f2a1f02" />
<link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
<link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css?v=d2d258e8" />
<link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css?v=f4aeca0c" />
Expand Down Expand Up @@ -432,32 +432,32 @@
<article class="bd-article">

<h1>Source code for pywhy_graphs.algorithms.cpdag</h1><div class="highlight"><pre>
<span></span><span class="kn">from</span> <span class="nn">enum</span> <span class="kn">import</span> <span class="n">Enum</span>
<span></span><span class="kn">from</span><span class="w"> </span><span class="nn">enum</span><span class="w"> </span><span class="kn">import</span> <span class="n">Enum</span>

<span class="kn">import</span> <span class="nn">networkx</span> <span class="k">as</span> <span class="nn">nx</span>
<span class="kn">import</span><span class="w"> </span><span class="nn">networkx</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">nx</span>

<span class="kn">import</span> <span class="nn">pywhy_graphs</span> <span class="k">as</span> <span class="nn">pg</span>
<span class="kn">import</span><span class="w"> </span><span class="nn">pywhy_graphs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pg</span>

<span class="n">__all__</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;pdag_to_dag&quot;</span><span class="p">,</span> <span class="s2">&quot;dag_to_cpdag&quot;</span><span class="p">,</span> <span class="s2">&quot;pdag_to_cpdag&quot;</span><span class="p">,</span> <span class="s2">&quot;order_edges&quot;</span><span class="p">,</span> <span class="s2">&quot;label_edges&quot;</span><span class="p">]</span>


<span class="k">class</span> <span class="nc">EDGELABELS</span><span class="p">(</span><span class="n">Enum</span><span class="p">):</span>
<span class="k">class</span><span class="w"> </span><span class="nc">EDGELABELS</span><span class="p">(</span><span class="n">Enum</span><span class="p">):</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;Edge labels for a CPDAG.&quot;&quot;&quot;</span>

<span class="n">COMPELLED</span> <span class="o">=</span> <span class="s2">&quot;compelled&quot;</span>
<span class="n">REVERSIBLE</span> <span class="o">=</span> <span class="s2">&quot;reversible&quot;</span>
<span class="n">UNKNOWN</span> <span class="o">=</span> <span class="s2">&quot;unknown&quot;</span>


<span class="k">def</span> <span class="nf">is_clique</span><span class="p">(</span><span class="n">G</span><span class="p">,</span> <span class="n">nodelist</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="nf">is_clique</span><span class="p">(</span><span class="n">G</span><span class="p">,</span> <span class="n">nodelist</span><span class="p">):</span>
<span class="n">H</span> <span class="o">=</span> <span class="n">G</span><span class="o">.</span><span class="n">subgraph</span><span class="p">(</span><span class="n">nodelist</span><span class="p">)</span>
<span class="n">n</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">nodelist</span><span class="p">)</span>
<span class="k">return</span> <span class="n">H</span><span class="o">.</span><span class="n">size</span><span class="p">()</span> <span class="o">==</span> <span class="n">n</span> <span class="o">*</span> <span class="p">(</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span>


<div class="viewcode-block" id="order_edges">
<a class="viewcode-back" href="../../../generated/pywhy_graphs.algorithms.order_edges.html#pywhy_graphs.algorithms.order_edges">[docs]</a>
<span class="k">def</span> <span class="nf">order_edges</span><span class="p">(</span><span class="n">G</span><span class="p">:</span> <span class="n">nx</span><span class="o">.</span><span class="n">DiGraph</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="nf">order_edges</span><span class="p">(</span><span class="n">G</span><span class="p">:</span> <span class="n">nx</span><span class="o">.</span><span class="n">DiGraph</span><span class="p">):</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;Find total ordering of the edges of DAG G.</span>

<span class="sd"> A total ordering is a topological sorting of the nodes, and then</span>
Expand Down Expand Up @@ -509,7 +509,7 @@ <h1>Source code for pywhy_graphs.algorithms.cpdag</h1><div class="highlight"><pr

<div class="viewcode-block" id="label_edges">
<a class="viewcode-back" href="../../../generated/pywhy_graphs.algorithms.label_edges.html#pywhy_graphs.algorithms.label_edges">[docs]</a>
<span class="k">def</span> <span class="nf">label_edges</span><span class="p">(</span><span class="n">G</span><span class="p">:</span> <span class="n">nx</span><span class="o">.</span><span class="n">DiGraph</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="nf">label_edges</span><span class="p">(</span><span class="n">G</span><span class="p">:</span> <span class="n">nx</span><span class="o">.</span><span class="n">DiGraph</span><span class="p">):</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;Label compelled and reversible edges of a DAG G.</span>

<span class="sd"> Label the edges of a DAG G as either compelled or reversible. Compelled</span>
Expand Down Expand Up @@ -590,7 +590,7 @@ <h1>Source code for pywhy_graphs.algorithms.cpdag</h1><div class="highlight"><pr

<div class="viewcode-block" id="pdag_to_dag">
<a class="viewcode-back" href="../../../generated/pywhy_graphs.algorithms.pdag_to_dag.html#pywhy_graphs.algorithms.pdag_to_dag">[docs]</a>
<span class="k">def</span> <span class="nf">pdag_to_dag</span><span class="p">(</span><span class="n">G</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="nf">pdag_to_dag</span><span class="p">(</span><span class="n">G</span><span class="p">):</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;Compute consistent extension of given PDAG resulting in a DAG.</span>

<span class="sd"> Implements the algorithm described in Figure 11 of :footcite:`chickering2002learning`.</span>
Expand Down Expand Up @@ -677,7 +677,7 @@ <h1>Source code for pywhy_graphs.algorithms.cpdag</h1><div class="highlight"><pr

<div class="viewcode-block" id="dag_to_cpdag">
<a class="viewcode-back" href="../../../generated/pywhy_graphs.algorithms.dag_to_cpdag.html#pywhy_graphs.algorithms.dag_to_cpdag">[docs]</a>
<span class="k">def</span> <span class="nf">dag_to_cpdag</span><span class="p">(</span><span class="n">G</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="nf">dag_to_cpdag</span><span class="p">(</span><span class="n">G</span><span class="p">):</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;Convert a DAG to a CPDAG.</span>

<span class="sd"> Creates a CPDAG from a DAG.</span>
Expand Down Expand Up @@ -711,7 +711,7 @@ <h1>Source code for pywhy_graphs.algorithms.cpdag</h1><div class="highlight"><pr

<div class="viewcode-block" id="pdag_to_cpdag">
<a class="viewcode-back" href="../../../generated/pywhy_graphs.algorithms.pdag_to_cpdag.html#pywhy_graphs.algorithms.pdag_to_cpdag">[docs]</a>
<span class="k">def</span> <span class="nf">pdag_to_cpdag</span><span class="p">(</span><span class="n">G</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="nf">pdag_to_cpdag</span><span class="p">(</span><span class="n">G</span><span class="p">):</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;Convert a PDAG to a CPDAG.</span>

<span class="sd"> Parameters</span>
Expand Down
10 changes: 5 additions & 5 deletions dev/_modules/pywhy_graphs/algorithms/cyclic.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@
<link href="../../../_static/styles/theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
<link href="../../../_static/styles/pydata-sphinx-theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />

<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=a746c00c" />
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=8f2a1f02" />
<link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
<link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css?v=d2d258e8" />
<link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css?v=f4aeca0c" />
Expand Down Expand Up @@ -432,14 +432,14 @@
<article class="bd-article">

<h1>Source code for pywhy_graphs.algorithms.cyclic</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">networkx</span> <span class="k">as</span> <span class="nn">nx</span>
<span></span><span class="kn">import</span><span class="w"> </span><span class="nn">networkx</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">nx</span>

<span class="kn">import</span> <span class="nn">pywhy_graphs.networkx</span> <span class="k">as</span> <span class="nn">pywhy_nx</span>
<span class="kn">import</span><span class="w"> </span><span class="nn">pywhy_graphs.networkx</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pywhy_nx</span>


<div class="viewcode-block" id="acyclification">
<a class="viewcode-back" href="../../../generated/pywhy_graphs.algorithms.acyclification.html#pywhy_graphs.algorithms.acyclification">[docs]</a>
<span class="k">def</span> <span class="nf">acyclification</span><span class="p">(</span>
<span class="k">def</span><span class="w"> </span><span class="nf">acyclification</span><span class="p">(</span>
<span class="n">G</span><span class="p">:</span> <span class="n">pywhy_nx</span><span class="o">.</span><span class="n">MixedEdgeGraph</span><span class="p">,</span>
<span class="n">directed_edge_type</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;directed&quot;</span><span class="p">,</span>
<span class="n">bidirected_edge_type</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;bidirected&quot;</span><span class="p">,</span>
Expand Down Expand Up @@ -544,7 +544,7 @@ <h1>Source code for pywhy_graphs.algorithms.cyclic</h1><div class="highlight"><p



<span class="k">def</span> <span class="nf">sigma_separated</span><span class="p">(</span><span class="n">G</span><span class="p">:</span> <span class="n">pywhy_nx</span><span class="o">.</span><span class="n">MixedEdgeGraph</span><span class="p">,</span> <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">z</span><span class="p">):</span>
<span class="k">def</span><span class="w"> </span><span class="nf">sigma_separated</span><span class="p">(</span><span class="n">G</span><span class="p">:</span> <span class="n">pywhy_nx</span><span class="o">.</span><span class="n">MixedEdgeGraph</span><span class="p">,</span> <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">z</span><span class="p">):</span>
<span class="n">acy_G</span> <span class="o">=</span> <span class="n">acyclification</span><span class="p">(</span><span class="n">G</span><span class="p">)</span>
<span class="k">return</span> <span class="n">pywhy_nx</span><span class="o">.</span><span class="n">m_separated</span><span class="p">(</span><span class="n">acy_G</span><span class="p">,</span> <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">z</span><span class="p">)</span>
</pre></div>
Expand Down
Loading

0 comments on commit ea42866

Please sign in to comment.