Pin cysignals (#59)

pyodide · Nov 27, 2024 · 91ae2d6 · 91ae2d6
1 parent 55434dd
commit 91ae2d6
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diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
@@ -319,4 +319,4 @@ jobs:
       - name: Upload wheels
         run: |
           # Anaconda denies packages with long descriptions, so set summary to null
-          anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --force ./repodata/*.whl --summary ""
+          anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --force ./repodata/*.whl --summary=" " --description=" "
diff --git a/packages/altair/meta.yaml b/packages/altair/meta.yaml
@@ -1,11 +1,11 @@
 package:
   name: altair
-  version: 5.3.0
+  version: 5.4.1
   top-level:
     - altair
 source:
-  url: https://files.pythonhosted.org/packages/46/30/2118537233fa72c1d91a81f5908a7e843a6601ccc68b76838ebc4951505f/altair-5.3.0-py3-none-any.whl
-  sha256: 7084a1dab4d83c5e7e5246b92dc1b4451a6c68fd057f3716ee9d315c8980e59a
+  url: https://files.pythonhosted.org/packages/9b/52/4a86a4fa1cc2aae79137cc9510b7080c3e5aede2310d14fae5486feec7f7/altair-5.4.1-py3-none-any.whl
+  sha256: 0fb130b8297a569d08991fb6fe763582e7569f8a04643bbd9212436e3be04aef
 about:
   home: https://altair-viz.github.io/
   PyPI: https://pypi.org/project/altair
@@ -19,7 +19,5 @@ requirements:
     - typing-extensions
     - Jinja2
     - jsonschema
-    - numpy
-    - pandas
-    - toolz
     - packaging
+    - narwhals
diff --git a/packages/altair/test_altair.py b/packages/altair/test_altair.py
@@ -6,17 +6,19 @@
 @run_in_pyodide(packages=["altair"])
 def test_altair(selenium):
     import altair as alt
-    import pandas as pd
 
-    data = pd.DataFrame(
-        {
-            "a": ["A", "B", "C", "D", "E", "F", "G", "H", "I"],
-            "b": [28, 55, 43, 91, 81, 53, 19, 87, 52],
-        }
+    data = alt.Data(
+        values=[
+            {"a": "A", "b": 5},
+            {"a": "B", "b": 3},
+            {"a": "C", "b": 6},
+            {"a": "D", "b": 7},
+            {"a": "E", "b": 2},
+        ]
     )
-    c = alt.Chart(data).mark_bar().encode(x="a", y="b").to_dict()
+    c = alt.Chart(data).mark_bar().encode(x="a:N", y="b:Q").to_dict()
 
     assert c["mark"]["type"] == "bar"
     assert c["encoding"]["x"]["field"] == "a"
     assert c["encoding"]["y"]["type"] == "quantitative"
-    assert "name" in c["data"]
+    assert "values" in c["data"]
diff --git a/packages/clingo/meta.yaml b/packages/clingo/meta.yaml
@@ -0,0 +1,21 @@
+package:
+  name: clingo
+  version: 5.7.1
+  top-level:
+    - clingo
+source:
+  url: https://files.pythonhosted.org/packages/3b/b3/c7b464426f70fe100cb4f3e5b45623e3eb82ea50f1dffdc2f820f1418fe0/clingo-5.7.1.tar.gz
+  sha256: 17400a1894da46b2d4941a4a85012c98fa8b3c67a5c6b4c73dcd8c8facbc059f
+about:
+  home: https://github.com/potassco/clingo
+  PyPI: https://pypi.org/project/clingo
+  summary: CFFI-based bindings to the clingo solver.
+  license: MIT
+requirements:
+  host:
+    - cffi
+  run:
+    - cffi
+extra:
+  recipe-maintainers:
+    - peter-gy
diff --git a/packages/clingo/test_clingo.py b/packages/clingo/test_clingo.py
@@ -0,0 +1,25 @@
+from pytest_pyodide import run_in_pyodide
+
+
+@run_in_pyodide(packages=["clingo"])
+def test_clingo(selenium):
+    from clingo.control import Control
+    from clingo.symbol import Number
+
+    class Context:
+        def inc(self, x):
+            return Number(x.number + 1)
+
+        def seq(self, x, y):
+            return [x, y]
+
+    def on_model(m):
+        print(m)
+
+    ctl = Control()
+    program = "\n".join(["p(@inc(10)).", "q(@seq(1,2))."])
+    ctl.add("base", [], program)
+
+    ctl.ground([("base", [])], context=Context())
+    solution = ctl.solve(on_model=on_model)
+    assert solution.satisfiable
diff --git a/packages/crc32c/meta.yaml b/packages/crc32c/meta.yaml
@@ -1,11 +1,11 @@
 package:
   name: crc32c
-  version: "2.4"
+  version: 2.7.1
   top-level:
     - crc32c
 source:
-  url: https://files.pythonhosted.org/packages/6f/19/47ac8d1d5b81a83272fe56d4cf425274437fd619ed0af9a5f9805484748c/crc32c-2.4.tar.gz
-  sha256: d985c4d9b1a1fd16c593d83f8735a8e4e156790a95338a1e0b199aac51ca1e5e
+  url: https://files.pythonhosted.org/packages/7f/4c/4e40cc26347ac8254d3f25b9f94710b8e8df24ee4dddc1ba41907a88a94d/crc32c-2.7.1.tar.gz
+  sha256: f91b144a21eef834d64178e01982bb9179c354b3e9e5f4c803b0e5096384968c
 about:
   home: https://github.com/ICRAR/crc32c
   PyPI: https://pypi.org/project/crc32c

diff --git a/packages/duckdb/meta.yaml b/packages/duckdb/meta.yaml
@@ -1,11 +1,11 @@
 package:
   name: duckdb
-  version: 1.1.0
+  version: 1.1.2
   top-level:
     - duckdb
 source:
-  url: https://duckdb.github.io/duckdb-pyodide/wheels/duckdb-1.1.0-cp312-cp312-pyodide_2024_0_wasm32.whl
-  sha256: 5f6dffea55b467b41b329e8117120403cbd63fd8096a046daa740dfc94dfcb66
+  url: https://duckdb.github.io/duckdb-pyodide/wheels/duckdb-1.1.2-cp312-cp312-pyodide_2024_0_wasm32.whl
+  sha256: aa794366f7acb924ddd1ecb32a349148a3c1343219a7d9d84812d3dcf47a4404
 about:
   home: https://github.com/duckdb/duckdb
   PyPI: https://pypi.org/project/duckdb

diff --git a/packages/lakers-python/meta.yaml b/packages/lakers-python/meta.yaml
@@ -1,11 +1,11 @@
 package:
   name: lakers-python
-  version: 0.3.3
+  version: 0.4.1
   top-level:
     - lakers
 source:
-  url: https://files.pythonhosted.org/packages/0b/53/4c942f81eb87be878f82331b63c04c7bff6268a837403837a07dfe129e7a/lakers_python-0.3.3.tar.gz
-  sha256: c0b3cfbc82478bde7dedcf06db275bdce328656361660bae7f527e6de617550c
+  url: https://files.pythonhosted.org/packages/0e/82/41fcc21dfaeda9646067c403b7e8112fd012766e463ce7d7b7839245d063/lakers_python-0.4.1.tar.gz
+  sha256: eb0d6e32b75ade0a6d6478c2f1d21af6da130a3aefee667433c5dde2ac2e21f8
 requirements:
   executable:
     - rustup

diff --git a/packages/libzfp/meta.yaml b/packages/libzfp/meta.yaml
@@ -0,0 +1,34 @@
+package:
+  name: libzfp
+  version: 1.0.1
+  tag:
+    - library
+    - static_library
+source:
+  url: https://github.com/LLNL/zfp/archive/refs/tags/1.0.1.tar.gz
+  sha256: 4984db6a55bc919831966dd17ba5e47ca7ac58668f4fd278ebd98cd2200da66f
+
+build:
+  type: static_library
+  exports: requested
+  script: |
+    mkdir -p build
+    cd build
+    emcmake cmake ${CMAKE_ARGS}                   \
+      -DBUILD_CFP=ON                              \
+      -DBUILD_UTILITIES=OFF                       \
+      -DBUILD_TESTING=OFF                         \
+      -DBUILD_SHARED_LIBS=OFF                     \
+      -DZFP_ENABLE_PIC=OFF                        \
+      -DCMAKE_BUILD_TYPE=Release                  \
+      -DCMAKE_C_FLAGS="-s WASM=1"                 \
+      -DZFP_WITH_OPENMP=OFF                       \
+      -DCMAKE_INSTALL_PREFIX=${WASM_LIBRARY_DIR}  \
+      ..
+
+    emmake make -j ${PYODIDE_JOBS:-3} install
+
+about:
+  home: https://zfp.llnl.gov/
+  summary: Open-source software for compressed floating-point arrays
+  license: BSD-3-Clause
diff --git a/packages/micropip/meta.yaml b/packages/micropip/meta.yaml
@@ -1,19 +1,19 @@
 package:
   name: micropip
-  # This version needs to be consistent with docs/requirements-doc.txt
-  version: 0.6.0
+  version: 0.7.1
   tag:
     - always
   top-level:
     - micropip
 
 source:
-  sha256: d6ebd9581a2f446141f782f813c3b9a41efdebedddd9d2e0cc11b2cee3d23761
-  url: https://files.pythonhosted.org/packages/98/aa/080602cd5f4cba1e6db3a0b9a3b1e756802029e6d9b30650e027c3a84c47/micropip-0.6.0-py3-none-any.whl
+  sha256: 7a012413e7cc70c5a39f025f96a3c86ba49d2aaf527640f06f2270426122e68e
+  url: https://files.pythonhosted.org/packages/3b/1c/774c0ec38815f3b694187e0f86b2bbe53e68ac14844d39d82059858eea9f/micropip-0.7.1-py3-none-any.whl
 
 requirements:
   run:
     - packaging
 about:
   home: https://github.com/pyodide/micropip
+  PyPI: https://pypi.org/project/micropip
   license: MPL-2.0
diff --git a/packages/msprime/meta.yaml b/packages/msprime/meta.yaml
@@ -1,11 +1,11 @@
 package:
   name: msprime
-  version: 1.3.1
+  version: 1.3.3
   top-level:
     - msprime
 source:
-  url: https://files.pythonhosted.org/packages/9c/c6/d2c24086da4492fe2c9d281d237b5fd09e5bf5c92a8956efad7522cf96b1/msprime-1.3.1.tar.gz
-  sha256: b3f62cd516ad2e43c8412ea1f242acad1bc939391cfe9caa19625874e2e34835
+  url: https://files.pythonhosted.org/packages/70/84/72a914d91c3e9cea91b8089ddc2a32cc9bdee50eda7e8900be6be70d1fdb/msprime-1.3.3.tar.gz
+  sha256: d8ae798076167f632b8fd7eccd5089faaa84c9034ca69422f886425f94a5b01b
 build:
   script: |
     export LIBGSL_INCLUDE_PATH=$(pkg-config --cflags-only-I --dont-define-prefix gsl)

diff --git a/packages/pydantic/meta.yaml b/packages/pydantic/meta.yaml
@@ -1,11 +1,11 @@
 package:
   name: pydantic
-  version: 2.8.2
+  version: 2.9.2
   top-level:
     - pydantic
 source:
-  sha256: 6f62c13d067b0755ad1c21a34bdd06c0c12625a22b0fc09c6b149816604f7c2a
-  url: https://files.pythonhosted.org/packages/8c/99/d0a5dca411e0a017762258013ba9905cd6e7baa9a3fd1fe8b6529472902e/pydantic-2.8.2.tar.gz
+  sha256: d155cef71265d1e9807ed1c32b4c8deec042a44a50a4188b25ac67ecd81a9c0f
+  url: https://files.pythonhosted.org/packages/a9/b7/d9e3f12af310e1120c21603644a1cd86f59060e040ec5c3a80b8f05fae30/pydantic-2.9.2.tar.gz
 requirements:
   run:
     - typing-extensions

diff --git a/packages/pydantic_core/meta.yaml b/packages/pydantic_core/meta.yaml
@@ -1,14 +1,11 @@
 package:
   name: pydantic_core
-  version: 2.23.1
+  version: 2.25.1
   top-level:
     - pydantic_core
 source:
-  url: https://files.pythonhosted.org/packages/60/a9/a64afaeecc30a42142f5e60bb61a1ec4817e90c2d1c0c7b242082f61ed00/pydantic_core-2.23.1.tar.gz
-  sha256: 12543919dbf3021e17b9e2cd5cd1b570c6585794fa487339b5b95564b9689452
-requirements:
-  executable:
-    - rustup
+  url: https://github.com/pydantic/pydantic-core/releases/download/v2.25.1/pydantic_core-2.25.1-cp312-cp312-emscripten_3_1_58_wasm32.whl
+  sha256: f4b77016b1511e54a8c6bd833bb68e190b96989ba9997f9e0f023cfb0f8a16c2
 about:
   home: https://github.com/pydantic/pydantic-core
   PyPI: https://pypi.org/project/pydantic_core

diff --git a/packages/pygame-ce/meta.yaml b/packages/pygame-ce/meta.yaml
@@ -31,6 +31,7 @@ build:
     -sUSE_LIBPNG=1
     -sUSE_GIFLIB=1
     -sUSE_HARFBUZZ=1
+    -Wno-unreachable-code-fallthrough
   ldflags: |
     -sRELOCATABLE=1
     -sUSE_SDL=2

diff --git a/packages/rateslib/meta.yaml b/packages/rateslib/meta.yaml
@@ -0,0 +1,23 @@
+package:
+  name: rateslib
+  version: 1.5.0
+  top-level:
+    - rateslib
+source:
+  url: https://files.pythonhosted.org/packages/02/d7/7695bb1b6a240ecfae77804d3fc242e30582fd83973f76dda03b23d921a6/rateslib-1.5.0.tar.gz
+  sha256: 7c7af2707f20974a70403689f84905757a4ed084e4c92229388d2fc30b331b04
+requirements:
+  run:
+    - numpy
+    - pandas
+    - matplotlib
+  executable:
+    - rustup
+about:
+  home: https://github.com/attack68/rateslib
+  PyPI: https://pypi.org/project/rateslib
+  summary: A fixed income library for trading interest rates
+  license: CC-BY-NC-ND-4.0
+extra:
+  recipe-maintainers:
+    - NickAltmann
diff --git a/packages/rateslib/test_rateslib.py b/packages/rateslib/test_rateslib.py
@@ -0,0 +1,17 @@
+import pytest
+from pytest_pyodide import run_in_pyodide
+
+
+@pytest.mark.driver_timeout(60)
+@run_in_pyodide(packages=["rateslib"])
+def test_add_tenor(selenium):
+    import datetime
+
+    import rateslib as rl
+
+    start_date = datetime.datetime(2024, 10, 29)
+    end_date = datetime.datetime(2024, 10, 31)
+
+    test_date = rl.add_tenor(start_date, "2b", "F", "nyc")
+
+    assert end_date == test_date
diff --git a/packages/rebound/meta.yaml b/packages/rebound/meta.yaml
@@ -1,6 +1,6 @@
 package:
   name: rebound
-  version: 3.24.2
+  version: 4.4.3
   top-level:
     - rebound
 build:
@@ -12,10 +12,12 @@ build:
     cp librebound.cpython-*.so $WASM_LIBRARY_DIR/lib/
 
 source:
-  url: https://files.pythonhosted.org/packages/5c/66/7564ac591bb088d7f35a59d560b5c26426bb8ef5415522232819fe11c45a/rebound-3.24.2.tar.gz
-  sha256: a3c5d4c6a10b9c1538e1051edcd6341ef3d13142b698ee9c4a1f112d9684d803
+  url: https://files.pythonhosted.org/packages/9d/f5/93f5abaf2c796e35b775e6fd395c2fd3729c17701fcb90fb4ed052fdd465/rebound-4.4.3.tar.gz
+  sha256: 8dd2fc69f4db4609abeb50048583d0428c716cd3eab11df868358f5384d826cf
   patches:
     - patches/0001-fix-install_name.patch
+    - patches/0002-fix-output.patch
+    - patches/0003-no-emscripten.patch
 
 requirements:
   run:

diff --git a/packages/rebound/patches/0001-fix-install_name.patch b/packages/rebound/patches/0001-fix-install_name.patch
@@ -1,15 +1,27 @@
-Index: rebound-3.24.2/setup.py
-===================================================================
---- rebound-3.24.2.orig/setup.py
-+++ rebound-3.24.2/setup.py
-@@ -23,8 +23,8 @@ extra_link_args=[]
+From 0a6cc79e6814d7e2dbc637541cad86cebc47f855 Mon Sep 17 00:00:00 2001
+From: Hanno Rein <[email protected]>
+Date: Wed, 6 Nov 2024 17:37:22 -0500
+Subject: [PATCH 3/3] install_name
+
+---
+ setup.py | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/setup.py b/setup.py
+index 6443cb27..965b2fc9 100644
+--- a/setup.py
++++ b/setup.py
+@@ -23,8 +23,8 @@ except:
+ extra_link_args=[]
  if sys.platform == 'darwin':
-     from distutils import sysconfig
-     vars = sysconfig.get_config_vars()
--    vars['LDSHARED'] = vars['LDSHARED'].replace('-bundle', '-shared')
+     config_vars = sysconfig.get_config_vars()
+-    config_vars['LDSHARED'] = config_vars['LDSHARED'].replace('-bundle', '-shared')
 -    extra_link_args=['-Wl,-install_name,@rpath/librebound'+suffix]
-+    # vars['LDSHARED'] = vars['LDSHARED'].replace('-bundle', '-shared')
-+    # extra_link_args=['-Wl,-install_name,@rpath/librebound'+suffix]
-
- libreboundmodule = Extension('librebound',
-                     sources = [ 'src/rebound.c',
++    #config_vars['LDSHARED'] = config_vars['LDSHARED'].replace('-bundle', '-shared')
++    #extra_link_args=['-Wl,-install_name,@rpath/librebound'+suffix]
+ if sys.platform == 'win32':
+     extra_compile_args=[ghash_arg, '-DLIBREBOUND', '-D_GNU_SOURCE', '-DSERVER']
+ else:
+-- 
+2.39.5 (Apple Git-154)
+