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Old cython and no coverage
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djhoese committed Jul 19, 2023
1 parent 1f620d7 commit 7ad98f5
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97 changes: 3 additions & 94 deletions .github/workflows/ci.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,41 +11,15 @@ env:
CACHE_NUMBER: 1

jobs:
lint:
name: lint and style checks
runs-on: ubuntu-latest
steps:
- name: Checkout source
uses: actions/checkout@v3
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: 3.9
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install flake8 flake8-docstrings flake8-debugger flake8-bugbear pytest
- name: Install Satpy
run: |
pip install -e .
- name: Run linting
run: |
flake8 satpy/
test:
runs-on: ${{ matrix.os }}
continue-on-error: ${{ matrix.experimental }}
needs: [lint]
strategy:
fail-fast: true
matrix:
os: ["windows-latest", "ubuntu-latest", "macos-latest"]
python-version: ["3.9", "3.10", "3.11"]
os: ["windows-latest"]
python-version: ["3.11"]
experimental: [false]
include:
- python-version: "3.11"
os: "ubuntu-latest"
experimental: true

env:
PYTHON_VERSION: ${{ matrix.python-version }}
Expand Down Expand Up @@ -83,33 +57,6 @@ jobs:
run: mamba env update -n test-environment -f continuous_integration/environment.yaml
if: steps.cache.outputs.cache-hit != 'true'

- name: Install unstable dependencies
if: matrix.experimental == true
shell: bash -l {0}
# We must get LD_PRELOAD for stdlibc++ or else the manylinux wheels
# may break the conda-forge libraries trying to use newer glibc versions
run: |
python -m pip install \
--index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple/ \
--trusted-host pypi.anaconda.org \
--no-deps --pre --upgrade \
matplotlib \
numpy \
pandas \
scipy; \
python -m pip install \
--no-deps --upgrade \
git+https://github.com/dask/dask \
git+https://github.com/dask/distributed \
git+https://github.com/zarr-developers/zarr \
git+https://github.com/Unidata/cftime \
git+https://github.com/rasterio/rasterio \
git+https://github.com/pydata/bottleneck \
git+https://github.com/pydata/xarray \
git+https://github.com/astropy/astropy;
LD_PRELOAD=$(python -c "import sys; print(sys.prefix)")/lib/libstdc++.so
echo "LD_PRELOAD=${LD_PRELOAD}" >> $GITHUB_ENV
- name: Install satpy
shell: bash -l {0}
run: |
Expand All @@ -118,42 +65,4 @@ jobs:
- name: Run unit tests
shell: bash -l {0}
run: |
export LD_PRELOAD=${{ env.LD_PRELOAD }};
pytest --cov=satpy satpy/tests --cov-report=xml --cov-report=
- name: Upload unittest coverage to Codecov
uses: codecov/codecov-action@v3
with:
flags: unittests
file: ./coverage.xml
env_vars: OS,PYTHON_VERSION,UNSTABLE

- name: Coveralls Parallel
uses: AndreMiras/coveralls-python-action@develop
with:
flag-name: run-${{ matrix.test_number }}
parallel: true
if: runner.os == 'Linux'

- name: Run behaviour tests
shell: bash -l {0}
run: |
export LD_PRELOAD=${{ env.LD_PRELOAD }};
coverage run --source=satpy -m behave satpy/tests/features --tags=-download
coverage xml
- name: Upload behaviour test coverage to Codecov
uses: codecov/codecov-action@v3
with:
flags: behaviourtests
file: ./coverage.xml
env_vars: OS,PYTHON_VERSION,UNSTABLE

coveralls:
needs: [test]
runs-on: ubuntu-latest
steps:
- name: Coveralls Finished
uses: AndreMiras/coveralls-python-action@develop
with:
parallel-finished: true
pytest satpy/tests
4 changes: 0 additions & 4 deletions continuous_integration/environment.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -20,10 +20,6 @@ dependencies:
- pyyaml
- pyproj
- pyresample>=1.24
- coveralls
- coverage
- codecov
- behave
- netcdf4
- h5py
- h5netcdf
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