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rm nltk #3441

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rm nltk #3441

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71c432b
rm nltk
antgonza Oct 12, 2024
451e74c
fix conflicts
antgonza Oct 12, 2024
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2 changes: 1 addition & 1 deletion CHANGELOG.md
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Expand Up @@ -16,7 +16,7 @@ Deployed on October 14th, 2024
* `Woltka v0.1.7, paired-end` superseded `Woltka v0.1.6` in `qp-woltka`; [more information](https://qiita.ucsd.edu/static/doc/html/processingdata/woltka_pairedend.html). Thank you to @qiyunzhu for the benchmarks!
* Other general fixes, like [#3424](https://github.com/qiita-spots/qiita/pull/3424), [#3425](https://github.com/qiita-spots/qiita/pull/3425), [#3439](https://github.com/qiita-spots/qiita/pull/3439), [#3440](https://github.com/qiita-spots/qiita/pull/3440).
* General SPP improvements, like: [NuQC modified to preserve metadata in fastq files](https://github.com/biocore/mg-scripts/pull/155), [use squeue instead of sacct](https://github.com/biocore/mg-scripts/pull/152), , [job aborts if Qiita study contains sample metadata columns reserved for prep-infos](https://github.com/biocore/mg-scripts/pull/151), [metapool generates OverrideCycles value](https://github.com/biocore/metagenomics_pooling_notebook/pull/225).

* We updated the available parameters for `Filter features against reference [filter_features]`, `Non V4 16S sequence assessment [non_v4_16s]` and all the phylogenetic analytical commands so they can use `Greengenes2 2024.09`.


Version 2024.07
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2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -105,7 +105,7 @@
install_requires=['psycopg2', 'click', 'bcrypt', 'pandas<2.0',
'biom-format', 'tornado<6.0', 'toredis', 'redis',
'scp', 'pyparsing', 'h5py', 'natsort', 'nose', 'pep8',
'networkx', 'humanize', 'wtforms<3.0.0', 'nltk<=3.8.1',
'networkx', 'humanize', 'wtforms<3.0.0',
'openpyxl', 'sphinx-bootstrap-theme', 'Sphinx<3.0',
'gitpython', 'redbiom', 'pyzmq', 'sphinx_rtd_theme',
'paramiko', 'seaborn', 'matplotlib', 'scipy<=1.10.1',
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