Add github workflows

.github/ISSUE_TEMPLATE/bug_report.md

@@ -0,0 +1,39 @@
+---
+name: Bug report
+about: Create a report to help us improve
+title: ""
+labels: bug
+assignees: ""
+---
+
+<!-- Describe the bug -->
+
+## Description
+
+[TEXT HERE]
+
+<!-- To reproduce -->
+
+```python
+# Your code here
+```
+
+<!-- Put your Error output in this code block (if applicable, else delete the block): -->
+
+<details> <summary> Error output </summary>
+
+```pytb
+# Paste the error output here, if applicable
+```
+
+</details>
+
+## Versions
+
+<details> <summary> Versions </summary>
+
+```pytb
+# Paste the ouput of tradeseq.__version__ and all relevant versions here
+```
+
+</details>

.github/ISSUE_TEMPLATE/feature_request.md

@@ -0,0 +1,17 @@
+---
+name: Feature request
+about: Suggest an idea for this project
+title: ""
+labels: enhancement
+assignees: ""
+---
+
+## Description
+
+**Is your feature request related to a problem? Please describe.**
+
+<!-- A clear and concise description of what the problem is. For example: I need to do [...] which is not possible because [...]. -->
+
+**Describe the solution you are looking for.**
+
+<!-- A clear and concise description of what you want to happen. -->

.github/pull_request_template.md

@@ -0,0 +1,23 @@
+## Changes
+
+<!-- Please remove section if this PR does change an existing feature -->
+
+-   ...
+
+## Bug fixes
+
+<!-- Please give section if this PR does not fix any bugs -->
+
+-   ...
+
+## New
+
+<!-- Please give section if this PR does not implement a new feature -->
+
+-   ...
+
+## Related issues
+
+<!-- Please list related issues. If none exist, open one and reference it here. -->
+
+Closes #

.github/workflows/lint.yml

@@ -0,0 +1,23 @@
+name: Lint
+
+on:
+    push:
+        branches: main
+    pull_request:
+        branches: main
+
+jobs:
+    linting:
+        runs-on: ubuntu-latest
+        steps:
+            - uses: actions/checkout@v3
+            - name: Setup Python 3.10
+              uses: actions/setup-python@v4
+              with:
+                  python-version: "3.10"
+            - name: Install dependencies
+              run: |
+                  python -m pip install --upgrade pip
+                  pip install pre-commit
+            - name: Check pre-commit compatibility
+              run: pre-commit run --all-files --show-diff-on-failure

LICENSE

@@ -25,4 +25,4 @@ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

README.md

@@ -1,2 +1,3 @@
 # Analysis template repository
-This contains the raw structure I usually use when doing single-cell/spatial data analysis. 
+
+This contains the raw structure I usually use when doing single-cell/spatial data analysis.

analysis/ML-2023-08-09_sample_notebook.ipynb → analysis/ML-2024-04-24_sample_notebook.ipynb

@@ -84,7 +84,7 @@
    "source": [
     "# import standard packages\n",
     "import numpy as np\n",
-    "import pandas as pd \n",
+    "import pandas as pd\n",
     "\n",
     "import matplotlib.pyplot as plt\n",
     "import seaborn as sns\n",