fix expando loop

quiltdata · Nov 13, 2024 · bd70b45 · bd70b45
1 parent 8e5a60e
commit bd70b45
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/plugins/nf-quilt/src/main/nextflow/quilt/QuiltProduct.groovy b/plugins/nf-quilt/src/main/nextflow/quilt/QuiltProduct.groovy
@@ -245,7 +245,7 @@ ${nextflow}
         * @param cf Map of config (from nextflow.config)
      */
     void updateFlags(Map meta, Map cf) {
-        flags.each { String key, value ->
+        for (String key : flags.properties.keySet()) {
             if (meta.containsKey(key)) {
                 flags.setProperty(key, meta[key])
             } else if (cf.containsKey(key)) {

diff --git a/plugins/nf-quilt/src/main/nextflow/quilt/jep/QuiltPackage.groovy b/plugins/nf-quilt/src/main/nextflow/quilt/jep/QuiltPackage.groovy
@@ -220,7 +220,7 @@ class QuiltPackage {
         S3PhysicalKey key = new S3PhysicalKey(bucket, '', null)
         try {
             key.listRecursively()
-        } catch (Exception e) {
+        } catch (IOException e) {
             log.error("isBucketAccessible: failed to check $bucket", e)
             return false
         }