Remove legacy packages and add to the bottom

generate_list.py

@@ -33,13 +33,19 @@ def generate_list():
     with open("README.md", "w") as file:
         file.write("# Open Source Python Packages in Hydrology\n")
         file.write(
-            "My attempt to list interesting open source python projects that can be used in the field of Hydrology.In a 2024 update I have automated various tasks to maintain the quality of this list, and added more information about the packages thatcan serve as potential quality indicators. In the description it is now listed when the last update on Pypi/Conda was, to highlight whether or not a package is probably active (🟢) or inactive (🔴). Also information about the FAIR data repository, description paper, and Continuous Integration testing (CI) is included. All this in the hope that more and more packages develop according to common research software developement best practices. Suggestions as issues or pull requests are welcome! \n\n"
+            "My attempt to list interesting open source python projects that can be used in the field of Hydrology. In a 2024 update, I automated various tasks to maintain the quality of this list, and added more information about the packages that can serve as quality indicators. The description now lists when the last update on Pypi/Conda was, to highlight whether a package is probably active (🟢) or inactive (🔴). Also information about the FAIR repository, description paper, and Continuous Integration testing (CI) is included. All this in the hope that more and more packages develop according to common research software developement best practices. Suggestions as issues or pull requests are welcome! \n\n"
         )
 
         file.write("Raoul A. Collenteur, Eawag.\n\n")
 
         categories = {}
+        legacy_packages = []
+
         for package_name, package in data.items():
+            if package.get("legacy", False):
+                legacy_packages.append((package_name, package))
+                continue
+
             category = package["category"]
             if category not in categories:
                 categories[category] = []
@@ -102,11 +108,68 @@ def generate_list():
                     f"| [{package_name}]({url}) | {description} | {pypi_logo} {conda_logo} | {docs_logo} | {ci_logo} | {doi_paper_logo} |\n"
                 )
 
-            file.write("# Background Info\n")
+        if legacy_packages:
+            file.write("\n## Legacy Packages\n")
             file.write(
-                'UPDATE: The Pypa package authority has now added ["Hydrology" as a classifier](https://github.com/pypa/warehouse/issues/5728) so we can start [collecting python packages](https://pypi.org/search/?q=&o=&c=Topic+%3A%3A+Scientific%2FEngineering+%3A%3A+Hydrology) used by the hydrological community! If you are maintaining a python package, please add `Topic :: Scientific/Engineering :: Hydrology` to your setup.py so people can find your package.\n\n'
+                "| Name | Description                                | PyPI Conda | Docs | CI | Paper |\n"
             )
-            file.write("\n")
+            file.write(
+                "| ---- | ------------------------------------------ | ---------- | ---- | -- | ----- |\n"
+            )
+            for package_name, package in legacy_packages:
+                description = package["description"]
+                url = package["url"]
+                pypi_url = package.get("pypi", "")
+                conda_url = package.get("conda", "")
+                docs_url = package.get("docs", "")
+                ci_status = package.get("CI", 0)
+                version = package.get("version", "")
+                last_update = package.get("last_update", "")
+
+                if version or last_update:
+                    if last_update:
+                        formatted_date = format_date(last_update)
+                        if is_date_old(last_update):
+                            formatted_date = f"🔴 {formatted_date}"
+                        elif is_date_recent(last_update):
+                            formatted_date = f"🟢 {formatted_date}"
+                    else:
+                        formatted_date = "🔴 No date"
+                    description += (
+                        f" (Version: {version}, Last Update: {formatted_date})"
+                    )
+
+                pypi_logo = (
+                    f"[![PyPI](https://img.shields.io/badge/-3776AB?logo=python&logoColor=white)]({pypi_url})"
+                    if pypi_url
+                    else ""
+                )
+                conda_logo = (
+                    f"[![Conda](https://img.shields.io/badge/-44A833?logo=anaconda&logoColor=white)]({conda_url})"
+                    if conda_url
+                    else ""
+                )
+                docs_logo = (
+                    f"[![Docs](https://img.shields.io/badge/-217346?logo=readthedocs&logoColor=white)]({docs_url})"
+                    if docs_url
+                    else ""
+                )
+                ci_logo = "🟢" if ci_status else ""
+                doi_paper_logo = (
+                    f"[![DOI](https://img.shields.io/badge/DOI-10.1000/xyz123-blue)]({package.get('doi_paper', '')})"
+                    if package.get("doi_paper", "")
+                    else ""
+                )
+
+                file.write(
+                    f"| [{package_name}]({url}) | {description} | {pypi_logo} {conda_logo} | {docs_logo} | {ci_logo} | {doi_paper_logo} |\n"
+                )
+
+        file.write("\n# Background Info\n")
+        file.write(
+            'UPDATE: The Pypa package authority has now added ["Hydrology" as a classifier](https://github.com/pypa/warehouse/issues/5728) so we can start [collecting python packages](https://pypi.org/search/?q=&o=&c=Topic+%3A%3A+Scientific%2FEngineering+%3A%3A+Hydrology) used by the hydrological community! If you are maintaining a python package, please add `Topic :: Scientific/Engineering :: Hydrology` to your setup.py so people can find your package.\n\n'
+        )
+        file.write("\n")
 
 
 if __name__ == "__main__":