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nsheff wants to merge 75 commits intomasterrefgenie/refgenconf:masterfrom devrefgenie/refgenconf:devCopy head branch name to clipboard

+2,126-173

Commits

Commits on Jul 19, 2021

• init dev branch

  stolarczyk

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  5ec4054

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• first pass at asset classes:

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  stolarczyk

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  ae560dc

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• add path to default asset class def schema, use rich for prompts

  stolarczyk

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  5768695

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• fix formatting

  stolarczyk

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  43dc71f

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Commits on Jul 20, 2021

• multiple changes:

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Commits on Jul 21, 2021

• decode custom properties output, add resolve_default_tag method

  stolarczyk

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  42e675d

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• add consts

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  6ef1ead

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Commits on Jul 22, 2021

• cleanup Recipe

  stolarczyk

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  78499ef

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• add methods for recipe inputs retrieval

  stolarczyk

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• multiple updates:

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Commits on Jul 23, 2021

• implement checksum exclusion feature; refgenie/refgenie#187

  stolarczyk

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  1848a9d

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• move asset_class key to asset section, add set_asset_class_method

  stolarczyk

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Commits on Jul 26, 2021

• multiple changes:

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  7409157

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• add/update consts

  stolarczyk

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Commits on Jul 27, 2021

• dont set asset description in set asset class method

  stolarczyk

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• multiple changes:

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Commits on Jul 28, 2021

• Multiple changes:

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Commits on Jul 29, 2021

• add recipe and asset class removal methods

  stolarczyk

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  ae54190

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Commits on Jul 30, 2021

• add rgc method for asset class creating, simplify dir creation in init

  stolarczyk

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  0367fc1

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• add asset class and recipe pulling methods

  stolarczyk

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Commits on Aug 2, 2021

• add asset class and recipe table creation methods

  stolarczyk

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Commits on Aug 3, 2021

• add option to create asset class from dict

  stolarczyk

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• add asset_class requirement in recipe inputs

  stolarczyk

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  f2dad17

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• use regular jinja var syntax

  stolarczyk

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  ba2aafd

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Commits on Aug 4, 2021

• add an option to force recipe/asset_class pulls, dont fail on first incompat server

  stolarczyk

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  b01f3c2

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• add source of asset_class/recipe when adding

  stolarczyk

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  2528c07

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• implement recipe auto dependancy resolving

  stolarczyk

  committed
  7be5bce

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Commits on Aug 9, 2021

• return parent asset classes from factory, add asset classes dependancies

  stolarczyk

  committed
  1e968ba

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Commits on Aug 10, 2021

• add refgenieserver consts

  stolarczyk

  committed
  c8b547d

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Commits on Aug 11, 2021

• add new sections to genome config schema

  stolarczyk

  committed
  1df2fcc

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• update refgenconf API link

  stolarczyk

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  501652c

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• add cfg upgrade to v0.5

  stolarczyk

  committed
  6b8d4f9

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Commits on Aug 12, 2021

• allow to pull asset class if missing in recipe pulls

  stolarczyk

  committed
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Commits on Aug 13, 2021

• update docstrings

  stolarczyk

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• allow null dete_built attrs

  stolarczyk

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  4f895cb

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Commits on Aug 16, 2021

• update recipe schema, other small changes

  stolarczyk

  committed
  2dc0e7a

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• allow custom properties resolution in a container

  stolarczyk

  committed
  4b8e4b3

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Commits on Aug 18, 2021

• add test section to recipe schema

  stolarczyk

  committed
  4ef03cb

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Commits on Aug 20, 2021

• add recipe testing infrastructure, update ubiquerg req

  stolarczyk

  committed
  d55d7b7

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• use tag char whitelist, more strict, required for URIs

  stolarczyk

  committed
  18bd89e

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Commits on Aug 24, 2021

• assorted tag-related updates

  stolarczyk

  committed
  b143c8a

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• update tag validation

  stolarczyk

  committed
  bca041d

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Commits on Aug 26, 2021

• changes related to missing custom_properties in recipe definition

  stolarczyk

  committed
  57df97f

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Commits on Aug 27, 2021

• add consts

  stolarczyk

  committed
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Commits on Aug 30, 2021

• add const

  stolarczyk

  committed
  cf3b118

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Commits on Sep 8, 2021

• restructures asset class def, implement seek keys validation feature

  stolarczyk

  committed
  fdaf53a

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• update asset class schema

  stolarczyk

  committed
  a0dc733

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Commits on Sep 9, 2021

• use asset class info to return a seekk key val

  stolarczyk

  committed
  dbfebd9

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Commits on May 4, 2022

• bring master changes into dev

  nsheff

  committed
  1f44190

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• lint

  nsheff

  committed
  4c92ea1

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• fix https deps, relative import

  nsheff

  committed
  2a7580d

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• use py 3.10

  nsheff

  committed
  c8dffe0

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• Use py 3.10

  nsheff

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  0b5ada9

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• add requirement jinja2

  nsheff

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  b12e09c

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• typo

  nsheff

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  0b79852

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• gdn

  nsheff

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  29626ba

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• imports

  nsheff

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  e79d63e

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Commits on May 5, 2022

• more import fixes...

  nsheff

  committed
  68bb968

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Commits on Jul 8, 2022

• Add raising correct error for non-existing asset

  

  Rafał Stępień

  committed
  5769d28

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Commits on Aug 25, 2022

• Update refgenconf/refgenconf.py

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  rafalstepien

  and

  fabianegli

  authored
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Commits on Sep 5, 2022

• allow dashes in genome names

  mirpedrol

  committed
  613395b

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Commits on Oct 3, 2022

• py version. See #142

  nsheff

  committed
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• temporarily stop testing 3.7. See #144

  nsheff

  committed
  807fd2d

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Commits on Oct 4, 2022

• Merge pull request #143 from mirpedrol/regex

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  nsheff

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  13de3b6

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• allow dashes in genome names

  

  mirpedrol

  authored and

  nsheff

  committed
  e3f2544

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Commits on Dec 6, 2023

• Merge pull request #140 from refgenie/issue-139-raise-more-specific-error-for-non-existing-asset

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  nsheff

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Commits on Oct 10, 2024

• downgrade default tag mesasge in populator plugin

  nsheff

  committed
  8416513

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• lint

  nsheff

  committed
  fc0e04f

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• fix plugin verbosity

  nsheff

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  049692d

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• Merge branch 'fix-plugin-verbosity' into dev

  nsheff

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  ee1c945

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• update changelog, version bump

  nsheff

  committed
  34386c4

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• Merge pull request #148 from refgenie/0.12.3

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  nsheff

  authored
  52a5db3

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• lint

  nsheff

  committed
  4de2e89

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• merge

  nsheff

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• Merge branch 'dev' of github.com:databio/refgenconf into dev

  nsheff

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